Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G01
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0224 + 15059904-15059910,15059955-15060185,15060345-150604...    29   3.6  
05_01_0190 + 1366791-1366817,1367536-1367616,1367858-1367900,136...    28   6.3  

>11_04_0224 +
           15059904-15059910,15059955-15060185,15060345-15060424,
           15060497-15060547,15060548-15060670,15062151-15062184,
           15062363-15062441,15062779-15062848,15075787-15075889,
           15076247-15076284,15076449-15076550,15077027-15077107,
           15077506-15077657,15077731-15077857,15078193-15078311,
           15078636-15078749,15079001-15079214
          Length = 574

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 68  LCQSNQN*LKLWCPITIQFMHARYYFCR 151
           L Q N+N L + C  +I  M A+YY CR
Sbjct: 4   LVQRNENLLAIQCQRSIYIMCAQYYCCR 31


>05_01_0190 +
           1366791-1366817,1367536-1367616,1367858-1367900,
           1368104-1368182,1368291-1368450,1368565-1368692,
           1369134-1369202,1369796-1369883,1370516-1370591,
           1370767-1370840,1372635-1372742,1373783-1373944,
           1374179-1374283,1374447-1374527,1374603-1375803,
           1376654-1376750,1378086-1378160,1378461-1378623
          Length = 938

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 495 DYDYEL*VLARQITVTMDRPNKGSSKRLRRRMSFEVDRLQ*RCIKMKTFQE 647
           D D +L V+A  +TV +  PN GS  R+  R       +   C  ++TF E
Sbjct: 346 DSDSDLEVVAESVTVNLRCPNSGSRMRIAGRFK---PCIHMGCFDLETFVE 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,845,465
Number of Sequences: 37544
Number of extensions: 279192
Number of successful extensions: 472
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)