Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_G01
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily ass...    29   3.3  
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       29   3.3  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    29   3.3  
AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer :...    29   3.3  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    29   3.3  
Z81116-8|CAB03297.1|   91|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine re...    28   7.5  

>U40951-4|AAG01568.1|  756|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 130 protein.
          Length = 756

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 96  NYGVQLQFNSCTR--VTIFVVIYIEFKIIFQTRYVKKAFFYNEYKCTRKRLNQNF*FVYF 269
           +Y + + F +C    VTI V +Y  F  I++ R+V +A+ + E     +R+   + F   
Sbjct: 268 DYTIPIVFWACILLLVTIVVFVYHYFDGIWERRFVSRAYTHLEDNAQEQRIRDFYDFQRM 327

Query: 270 SD 275
           S+
Sbjct: 328 SE 329


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +1

Query: 211  IMNTSVQEKG*IKIFSLSIFRIARNVMQLKLRLLPWGSFC--LRY-RLLLHKTYHHNTP 378
            ++ T ++    + +FSL   +I  N+      L  W  FC  LRY R +L+K+    TP
Sbjct: 958  VVGTQIEVAALVHLFSLDHHQIYTNLALFAGFLAAWDPFCALLRYRRRILYKSETRRTP 1016


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
            protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +1

Query: 211  IMNTSVQEKG*IKIFSLSIFRIARNVMQLKLRLLPWGSFC--LRY-RLLLHKTYHHNTP 378
            ++ T ++    + +FSL   +I  N+      L  W  FC  LRY R +L+K+    TP
Sbjct: 958  VVGTQIEVAALVHLFSLDHHQIYTNLALFAGFLAAWDPFCALLRYRRRILYKSETRRTP 1016


>AC006608-2|AAF39756.1| 1147|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform b
            protein.
          Length = 1147

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +1

Query: 211  IMNTSVQEKG*IKIFSLSIFRIARNVMQLKLRLLPWGSFC--LRY-RLLLHKTYHHNTP 378
            ++ T ++    + +FSL   +I  N+      L  W  FC  LRY R +L+K+    TP
Sbjct: 958  VVGTQIEVAALVHLFSLDHHQIYTNLALFAGFLAAWDPFCALLRYRRRILYKSETRRTP 1016


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform a
            protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +1

Query: 211  IMNTSVQEKG*IKIFSLSIFRIARNVMQLKLRLLPWGSFC--LRY-RLLLHKTYHHNTP 378
            ++ T ++    + +FSL   +I  N+      L  W  FC  LRY R +L+K+    TP
Sbjct: 958  VVGTQIEVAALVHLFSLDHHQIYTNLALFAGFLAAWDPFCALLRYRRRILYKSETRRTP 1016


>Z81116-8|CAB03297.1|   91|Caenorhabditis elegans Hypothetical
           protein T06C12.9 protein.
          Length = 91

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/30 (36%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -2

Query: 503 VIVNIWLYFMTVYPTWQY-TYTMFLNADEC 417
           V++NI+LY + V P +++ T+  F+   EC
Sbjct: 52  VLINIFLYILLVLPAYKHATWFCFVKGREC 81


>AF016419-8|AAG24053.1|  293|Caenorhabditis elegans Serpentine
           receptor, class x protein6 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -2

Query: 647 FLKCFHLNASLL*AIYFKTHSSSQSFRAAFIWSVHRNGYL 528
           F+ CFH + S++   Y  T +   +    F W +H NG++
Sbjct: 57  FVACFHSSLSIIFGRYVLTGARINNLSVFFGW-IHMNGFV 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,962,766
Number of Sequences: 27780
Number of extensions: 290096
Number of successful extensions: 645
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)