Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F23
         (406 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    25   0.37 
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   0.86 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   2.6  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 24.6 bits (51), Expect = 0.37
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +1

Query: 4   TYFTISKSSPXCLCLRLVIHCXSFLF 81
           TYF +SK+   C  +  +++C   +F
Sbjct: 396 TYFRLSKTKTFCTLVTALVYCSLAIF 421


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -1

Query: 280 IYKTQCQQSRVYNSDS 233
           IY+  CQ S V NSDS
Sbjct: 36  IYEPSCQYSPVSNSDS 51


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 2.6
 Identities = 7/26 (26%), Positives = 14/26 (53%)
 Frame = +1

Query: 4   TYFTISKSSPXCLCLRLVIHCXSFLF 81
           +YF +SK+   C  +  +++C    F
Sbjct: 33  SYFRLSKAKSFCTFVAALVYCSVTFF 58


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,090
Number of Sequences: 336
Number of extensions: 1192
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)