Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F21
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom...    45   1e-05
SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyce...    28   1.5  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      27   2.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    27   2.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    27   2.6  
SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit Pa...    26   4.6  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.6  
SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|ch...    25   8.0  
SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    25   8.0  
SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy...    25   8.0  

>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 266

 Score = 44.8 bits (101), Expect = 1e-05
 Identities = 35/131 (26%), Positives = 60/131 (45%)
 Frame = -3

Query: 549 ICFLGGPILMRAAWYTAGVVGGLSTIAVCAPSGEFLNMRAPLAMGLGAVFAASLAGMFLP 370
           I F    I++ A + T GV   L+     +   +F  +   L + L ++    L   F+P
Sbjct: 140 ITFFSARIILEAVFITLGVFVALTAFTFQS-KWDFSRLGGFLYVSLWSLILTPLIFFFVP 198

Query: 369 PTXXXXXXXXXXXXXXXLIVFGGFLLYDTQSIIKRAEMHPPYGFKPYDPINSAISVYLDV 190
            T                +VF G++L+DT +I+ R        + P + I S++ +YLD 
Sbjct: 199 STPFIDMAFAGFGT----LVFCGYILFDTYNILHR--------YSPEEFIMSSLMLYLDF 246

Query: 189 LNIFMRIAMIL 157
           +N+F+RI  IL
Sbjct: 247 INLFIRILQIL 257


>SPAC1F3.07c |rsc58||RSC complex subunit Rsc58|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +2

Query: 299 NPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAP 412
           +PP+T KPP  + E+NP+   L   + + +   ++ AP
Sbjct: 178 SPPSTAKPPASVIEFNPSLAKLPTVKYLQSGPFSSIAP 215


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 505 HCWCSWWSE-YNCSVCTIWRVLEHACSTCYGSRSCVCC 395
           H +C+  SE +N ++  I+R   + C TCY ++  V C
Sbjct: 341 HHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKYAVKC 378


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
 Frame = -2

Query: 535  WPNPDACSLVHCWCSWWSEYNCSVCTI------WRVLEHACSTCYGSRSCVCCISGWDVS 374
            W  PD  S VH      SE  CS+C        WR    AC        CV  +   ++ 
Sbjct: 2536 WMLPDTTSNVHLEKDNTSEL-CSLCDSRFSLMEWRSQCRACGNSNVCSDCVSMLKDTNIK 2594

Query: 373  TTY*C 359
            T Y C
Sbjct: 2595 TCYEC 2599


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 390 EMQQTQLLDP*QVEHACSRTLQMVHTLQLYS--DHQLH--QQCTKLHASGLGHQGS 545
           E ++   L+P  V   CSRT++ V TL L +  DH +       K H  GL ++ S
Sbjct: 517 EAKELPKLNPVWVRANCSRTIEPVKTLLLLAKPDHTVKTTTPARKQHIRGLSYEQS 572


>SPAC6F12.12 |par2|pbp2|protein phosphatase regulatory subunit
           Par2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 627

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 275 IDCVSYNKNPPNTIKPPYKLSEYNPAPRALVGGRNIPARDAANTAPR 415
           I   S+   P +T  PPY +S+  P  + L G  N+    +    PR
Sbjct: 146 ISSASFLSVPQST--PPYLVSQPTPLNKFLAGAENVDIPHSLRPVPR 190


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
 Frame = -2

Query: 493 SWWSEYNCSVC-----TIWRVLEHACSTCYGSRSCVCCI 392
           +W S   C+ C     T +  L H C++C+   +C+  I
Sbjct: 341 TWISTIRCNDCNSRCDTKYHFLGHKCNSCHSYNTCISSI 379


>SPAC17G8.07 |||YEATS family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/75 (21%), Positives = 28/75 (37%)
 Frame = +1

Query: 67  MSSNTRDGQHNASNPIVIFRLLPPVATSSRQDHGNSHEYIQNIQINRYGRIDWVIWFESV 246
           M+ NTR  +   S PI++     P+    ++     H +   I +      D   W   V
Sbjct: 1   MAPNTRVSKCQISRPILVGNDAKPLTKEEKEKAPTDHTHTWRIFVEGVDGEDISKWVRKV 60

Query: 247 GWMHLGAFNNRLRIV 291
            +     +NN  R +
Sbjct: 61  VFKLHDTYNNPTRTI 75


>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -3

Query: 615  GFGAKQLAWMA---HTGIMGAVIAPICFLGGPILMRAAWYTAGVVGGLSTI 472
            GFGA  + WM     T  +G +  P   + GP L RA W   G++  +  I
Sbjct: 1229 GFGA--IKWMHVFWGTSNVG-IFLPWAGIAGPYLSRALWLWLGILDSIQGI 1276


>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 278

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 549 ICFLGGPILMRAAWYTAGVVGGLSTIAVCAPSG 451
           IC L  P  +R     A  + GL  + VCAP+G
Sbjct: 152 ICELKIPTTLRELVQRAKELTGLQYVQVCAPNG 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,220,286
Number of Sequences: 5004
Number of extensions: 72060
Number of successful extensions: 237
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)