Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F20
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    73   3e-14
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    28   0.93 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.8  
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    26   5.0  
SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    25   8.7  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    25   8.7  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 72.9 bits (171), Expect = 3e-14
 Identities = 42/131 (32%), Positives = 64/131 (48%), Gaps = 3/131 (2%)
 Frame = -3

Query: 605 GVHTQFDTQKAKFSKNNFAXGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKLDCGVSMKW 429
           G    +D QK   S      GY +   ++     N    F  S Y +VS  ++ G ++ W
Sbjct: 148 GAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDVEAGGNVTW 207

Query: 428 TAGS-ADTL-FGVGAKYALDQDASLHAKINNKSLIGLGYQQKLRPGVTLTLSAAIDGQNF 255
            A S A+ +   + +KYALD+D  +  KIN+  +  L Y Q +RPGVT+ L   +D Q  
Sbjct: 208 DAASTANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQLDTQRL 267

Query: 254 NAGGHKVGVAL 222
               HK G++L
Sbjct: 268 GQPAHKAGLSL 278


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 17/59 (28%), Positives = 24/59 (40%)
 Frame = -2

Query: 324 WLPTETTPRRNPYIVCCHRWTELQCRWPQGWRCPRTRALENITKPTLVDKYILLSQPNS 148
           W    T PR       C + T+++ + PQ    P T  L    K   +D +  L  PNS
Sbjct: 145 WEGNLTNPRSEQPHTPCKKGTKIKLKPPQSPLSPTTSLLARKCKHIDLDTFSRLDHPNS 203


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 17/59 (28%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -1

Query: 358 TPRSTTSPSSVLVT-NRNYAQA*PLHCLLPSMDRTSMQVA-TRLALPSNSSPRKYNQTY 188
           +PR+T +PS+   + N N   +   +    +   T + +A ++ +LPSNS+P K N ++
Sbjct: 263 SPRNTPTPSNNGTSINANVTSSLTSNSTGKTSKTTDLLIAASKKSLPSNSTPSKPNTSF 321


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -3

Query: 599 HTQFDTQKAKFSKNNFAXGYQSGDFALHTNVDNGKDFGGSIYQKVSD 459
           H Q     A F+K++   GY+    AL++  DN   +  +   K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210


>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 349 ILACRDASWSSAYFAPTPNNV--SAEPAVHFMLTPQSSLSD 465
           +  C+D   +S  F P P+N+   A+  V ++  P  S+ D
Sbjct: 521 LATCKDVVCASDAFFPFPDNIYRLAQSGVKYVAAPGGSVMD 561


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -2

Query: 402 RSWSEVRAGPRRVSARQDQQQVPHR 328
           R WSE+  G ++    +D+ +VP +
Sbjct: 534 RKWSEINDGLQQKKEEEDEDEVPSK 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,776
Number of Sequences: 5004
Number of extensions: 52236
Number of successful extensions: 110
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)