Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F18
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   6.7  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   8.9  

>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -3

Query: 390 RHLKNIAITRI*PILFCYKKELSTVPCFSIT**EI*TNLNESV*FATRILIY 235
           +H+K+I      P+ FC ++  S V    I+  E   +L + V FAT +  Y
Sbjct: 358 QHVKDITFIDKKPLRFCAERLTSLVRALQISLVEDFHSLQQVVAFATLVATY 409


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 447 NQFNLHFISLNNVTTINHSSNIITSGKI 530
           NQF + F  L N+  +N   ++   GK+
Sbjct: 618 NQFTVSFDELENIRVLNSLPSLFADGKL 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,829,583
Number of Sequences: 5004
Number of extensions: 29360
Number of successful extensions: 56
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)