Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_F15
(622 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu... 166 3e-42
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun... 166 3e-42
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 26 5.1
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 25 6.7
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 25 6.7
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 6.7
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 6.7
>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 166 bits (403), Expect = 3e-42
Identities = 84/213 (39%), Positives = 124/213 (58%), Gaps = 8/213 (3%)
Frame = -3
Query: 617 KFFEDENTQELKEKFYRLMIAVDQHNGQYLSVCRHFRAL-GTA-------GGPEALIGSV 462
KFFE E+ Q LK K+Y I + H+ YL VC+++RA+ TA E L V
Sbjct: 200 KFFEKEDVQSLKLKYYEQKIRIGLHDDAYLDVCKYYRAVYDTAVVQEDPEKWKEILENVV 259
Query: 461 VFLILAPYDNEQADLTHRVNEDKELDKLPDYKELLRLFINPEIIRWNTLCSSYEKMLRAT 282
F +L PYDNEQADL HR+N D +L+ LP ++L++ FI E++RW + Y LR+
Sbjct: 260 CFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNELMRWPKIAEIYGSALRSN 319
Query: 281 PYFDASDDKGQERWNDLKNRVVEHNIRIMSMYYTRITLKRMXXXXXXXXXXXXXXXXXLV 102
P F +D+KG++RW++L+ RV+EHNIR+++ YY+RI R+ L+
Sbjct: 320 PVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFLCDLI 379
Query: 101 VSAVVKAKIDRPAGVVHFSLNMDASDRLNEWSN 3
AKIDRPA V+ F + + ++LNEW +
Sbjct: 380 AKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGS 412
>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 166 bits (403), Expect = 3e-42
Identities = 84/213 (39%), Positives = 124/213 (58%), Gaps = 8/213 (3%)
Frame = -3
Query: 617 KFFEDENTQELKEKFYRLMIAVDQHNGQYLSVCRHFRAL-GTA-------GGPEALIGSV 462
KFFE E+ Q LK K+Y I + H+ YL VC+++RA+ TA E L V
Sbjct: 200 KFFEKEDVQSLKLKYYEQKIRIGLHDDAYLDVCKYYRAVYDTAVVQEDPEKWKEILENVV 259
Query: 461 VFLILAPYDNEQADLTHRVNEDKELDKLPDYKELLRLFINPEIIRWNTLCSSYEKMLRAT 282
F +L PYDNEQADL HR+N D +L+ LP ++L++ FI E++RW + Y LR+
Sbjct: 260 CFALLTPYDNEQADLLHRINADHKLNSLPLLQQLVKCFIVNELMRWPKIAEIYGSALRSN 319
Query: 281 PYFDASDDKGQERWNDLKNRVVEHNIRIMSMYYTRITLKRMXXXXXXXXXXXXXXXXXLV 102
P F +D+KG++RW++L+ RV+EHNIR+++ YY+RI R+ L+
Sbjct: 320 PVFAENDEKGEKRWSELRKRVIEHNIRVVANYYSRIHCSRLGVLLDMSPSETEQFLCDLI 379
Query: 101 VSAVVKAKIDRPAGVVHFSLNMDASDRLNEWSN 3
AKIDRPA V+ F + + ++LNEW +
Sbjct: 380 AKHHFYAKIDRPAQVISFKKSQNVQEQLNEWGS 412
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/39 (25%), Positives = 15/39 (38%)
Frame = -3
Query: 326 WNTLCSSYEKMLRATPYFDASDDKGQERWNDLKNRVVEH 210
WN YE +L + A + W + VV+H
Sbjct: 191 WNEAARQYEDILNRPVFLSAKRKSNYQIWLEFSELVVQH 229
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = -3
Query: 611 FEDENTQELKEKFY---RLMIAVDQHNGQYLSVCRHFR 507
F+ + EL ++ + +M+A D +G+YL+V FR
Sbjct: 281 FQAVSVPELTQQMFDANNMMVAADPRHGRYLTVAALFR 318
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Frame = -3
Query: 617 KFFEDENTQELKEKFYRLMIAV--DQHNGQYLSVCRHFR 507
K E+E ++ ++ + L + + +G Y+SVCR+FR
Sbjct: 175 KSIEEELVEKYQQSWKTLFLKKPRSRFDGCYISVCRYFR 213
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 6.7
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +3
Query: 36 HIQAKVYNASWTID 77
H + K++NA WTID
Sbjct: 223 HCRHKIFNADWTID 236
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 6.7
Identities = 9/30 (30%), Positives = 15/30 (50%)
Frame = +3
Query: 366 FIIRKFIQLLIFIYSMCEICLFIIIWCQYK 455
F R+F + ++ MC I I IW ++
Sbjct: 212 FFRRRFYEWFFVLHHMCSIGFLITIWLHHR 241
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,405,141
Number of Sequences: 5004
Number of extensions: 46697
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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