Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F15
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome regu...   135   3e-32
Z81524-7|CAD54142.2|  597|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81050-15|CAN86587.1|  597|Caenorhabditis elegans Hypothetical p...    30   1.5  
U64848-15|AAB04891.1|  384|Caenorhabditis elegans Hypothetical p...    29   2.0  
Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U39848-8|AAA80692.1|  323|Caenorhabditis elegans Forkhead transc...    29   3.5  
AF016683-10|AAB66198.1|  405|Caenorhabditis elegans Hypothetical...    28   6.2  
Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF025457-3|AAB70963.2|  248|Caenorhabditis elegans Hypothetical ...    27   8.2  
AC103567-4|AAL35731.2|  598|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U40029-6|AAA81126.1|  490|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 5 protein.
          Length = 490

 Score =  135 bits (326), Expect = 3e-32
 Identities = 81/225 (36%), Positives = 128/225 (56%), Gaps = 20/225 (8%)
 Frame = -3

Query: 617 KFF---EDENTQELKEKFYRLMIAVDQHNGQYLSVCRHFRAL--------GTAGGPEALI 471
           KFF   +++  Q LK K+Y  MI +  H+G YL VCRH R +         +A     L 
Sbjct: 234 KFFNKSDEDEVQNLKLKYYDSMIRIGLHDGNYLDVCRHHREIYETKKIKADSAKATSHLR 293

Query: 470 GSVVFLILAPYDNEQADLTHRVNEDKELDKLPDYKELLRLFINPEIIRW-NTLCSSYEKM 294
            ++V+ +LAP+ NEQ DL +R+   +EL+ +PDYK +L LFIN E+I +  T+ + YEK+
Sbjct: 294 SAIVYCLLAPHTNEQWDLLNRIAIQRELETVPDYKIILDLFINQELISFKGTIVAKYEKL 353

Query: 293 LRA-------TPYFDASDDKGQERWNDLKNRVVEHNIRIMSMYYTRITLKRMXXXXXXXX 135
           LR        T  FD S + G++RW+DL  RV EHN+R+++ YYT+IT +R+        
Sbjct: 354 LRRGTTSSPDTGIFDKSTE-GEKRWSDLHLRVGEHNMRMIAKYYTQITFERLAELLDFPV 412

Query: 134 XXXXXXXXXLVVSA-VVKAKIDRPAGVVHFSLNMDASDRLNEWSN 3
                    L+V+  +  AK+ RP+ +V+  L     ++L+ W++
Sbjct: 413 DEMESFVCNLIVTGQITGAKLHRPSRIVNLRLKKANVEQLDVWAS 457


>Z81524-7|CAD54142.2|  597|Caenorhabditis elegans Hypothetical
           protein F32H5.7 protein.
          Length = 597

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
 Frame = -3

Query: 413 HRVNEDKELDKLPDYKELLRLFINPEI-----IRWNTLCSSYEKMLRATPYFDASDDKGQ 249
           H VNE+ E ++ PD +    +   PE+     IR ++ C   +K+L+A    +       
Sbjct: 513 HSVNEEYETEQFPDIE--AEIIDKPEVSQNEGIRKSSQCIELQKLLKALNDLNNEVVSQD 570

Query: 248 ERWN-DLKNRVVEHNIRIMSMYYT 180
            RW+ + + R +E+  RI S + T
Sbjct: 571 GRWSEEARRRYLEYQ-RIWSRFRT 593


>Z81050-15|CAN86587.1|  597|Caenorhabditis elegans Hypothetical
           protein F32H5.7 protein.
          Length = 597

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
 Frame = -3

Query: 413 HRVNEDKELDKLPDYKELLRLFINPEI-----IRWNTLCSSYEKMLRATPYFDASDDKGQ 249
           H VNE+ E ++ PD +    +   PE+     IR ++ C   +K+L+A    +       
Sbjct: 513 HSVNEEYETEQFPDIE--AEIIDKPEVSQNEGIRKSSQCIELQKLLKALNDLNNEVVSQD 570

Query: 248 ERWN-DLKNRVVEHNIRIMSMYYT 180
            RW+ + + R +E+  RI S + T
Sbjct: 571 GRWSEEARRRYLEYQ-RIWSRFRT 593


>U64848-15|AAB04891.1|  384|Caenorhabditis elegans Hypothetical
           protein C50E3.13 protein.
          Length = 384

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 434 NEQADLTHRVNEDKELDKLPDYKELLRLFINPEI 333
           + Q D      ++  +D+LPD  ELL L +NP I
Sbjct: 258 SNQEDYDSEDEDEHHVDELPDLLELLSLVVNPVI 291


>Z46812-1|CAA86843.1| 1405|Caenorhabditis elegans Hypothetical
           protein ZK675.1 protein.
          Length = 1405

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = -3

Query: 398 DKELDKLPDYKELLRLFI---NPEIIRWNTLCSSYEKMLRATPYFDASD 261
           D+EL+ LP+ KE +R       PE+ R N L   Y+ +++ TP ++  D
Sbjct: 170 DEELNFLPNIKEAMRNVTGDSGPELPRENGLGGGYQVLIQ-TPEYEGQD 217


>U39848-8|AAA80692.1|  323|Caenorhabditis elegans Forkhead
           transcription factor familyprotein 6 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -3

Query: 413 HRVNEDKELDKLP-DYKELLRLFINPEIIRWNTLCSSYEKMLRATPYFDASDDKGQERWN 237
           H V E   +DK P  Y  L+ + I+    +  TL   Y+ +    PY+  +D K ++ W 
Sbjct: 11  HIVQEGNSIDKPPYSYVALIAMAIDASPDKRMTLNQIYKFIEAKFPYYRDADAKRKQGWQ 70

Query: 236 DLKNRVVEHNIRI 198
           +     + HN+ +
Sbjct: 71  N----SIRHNLSL 79


>AF016683-10|AAB66198.1|  405|Caenorhabditis elegans Hypothetical
           protein K09F6.8 protein.
          Length = 405

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = -3

Query: 422 DLTH--RVNEDKELDKLPDYKELLRLFINPEIIRWNTLCSSYEKMLRATPYFDASDDKGQ 249
           DL H   ++  + +++LP    +   F   E  R N+     E           +++K +
Sbjct: 79  DLNHYGAIDNAQVVERLPGEVLIDGRFNYSEKARINSELEQLEVEQERIEKIQDAEEKAR 138

Query: 248 ERWNDLKNRVVEHNIRIMSMYYTRITL 168
           E WN  K R V H I  +  Y  R T+
Sbjct: 139 E-WNRFKRRTVMHQINTLRFYAPRGTV 164


>Z81462-3|CAB03842.2| 1034|Caenorhabditis elegans Hypothetical
           protein C04H5.3 protein.
          Length = 1034

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 93  CTHNKLTQGLFCLRLAQTEKFTHAFERDASI 185
           C+   L   ++C + A  EKF  AF RD ++
Sbjct: 559 CSRGTLQDVIYCEKFAMDEKFQGAFVRDITM 589


>AF025457-3|AAB70963.2|  248|Caenorhabditis elegans Hypothetical
           protein C08E3.5 protein.
          Length = 248

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 534 LSIMLVHSYHQSVKLLFQLLSIFVFKKL 617
           LS+  + S+H S + L QLL IF  KKL
Sbjct: 160 LSLKTIQSHHVSFQELAQLLPIFPAKKL 187


>AC103567-4|AAL35731.2|  598|Caenorhabditis elegans Hypothetical
           protein Y51F10.4 protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 120 LFCLRLAQTEKFTHAFERDASIVHRHYANIMFNNSVLKIV 239
           LFCL L   E  TH  + +    H   A I+  N++L I+
Sbjct: 339 LFCLILRDKESITHTVDLEKFTFHILTAVILLFNTILAIL 378


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,383,348
Number of Sequences: 27780
Number of extensions: 263428
Number of successful extensions: 828
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)