Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F15
         (622 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   3.2  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.3  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.3  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   7.3  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 371 YKELLRLFINPEIIRWNTLCSSYEKMLRATPYFDASDDKGQERWNDL 231
           +++ LRL  NP +       S++  +    P+F  S + G  +W  L
Sbjct: 27  FRKGLRLHDNPSLREGLAGASTFRCVFVLDPWFAGSTNIGINKWRFL 73


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 205 ILCSTTLFLRSFQRS*PLSSDA 270
           IL S T+FL     S P +SDA
Sbjct: 232 ILLSLTVFLNLVAESMPTTSDA 253


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 205 ILCSTTLFLRSFQRS*PLSSDA 270
           IL S T+FL     S P +SDA
Sbjct: 232 ILLSLTVFLNLVAESMPTTSDA 253


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 205 ILCSTTLFLRSFQRS*PLSSDA 270
           IL S T+FL     S P +SDA
Sbjct: 232 ILLSLTVFLNLVAESMPTTSDA 253


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 205 ILCSTTLFLRSFQRS*PLSSDA 270
           IL S T+FL     S P +SDA
Sbjct: 300 ILLSLTVFLNLVAESMPTTSDA 321


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = -3

Query: 506 ALGTAGGPEALIGSVVFLILAPYDNEQADLTHRVNEDKELDKLPDYKELLRLFINP 339
           +L T+G    L     +  + P   EQ +L HR+   +   + P  ++L R+   P
Sbjct: 309 SLSTSGSSGILTPVSPYGYVKPISPEQEELIHRLVYFQNEYEQPSEEDLKRITNQP 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,426
Number of Sequences: 438
Number of extensions: 3614
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)