Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F13
         (659 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0133 - 1057679-1057880,1058112-1058377                           30   1.9  
10_08_0898 + 21424379-21424792,21424974-21425723                       29   3.3  
11_02_0131 + 8651175-8651313,8651567-8651743,8651761-8651879,865...    29   4.3  
03_06_0083 - 31532213-31532775,31534016-31534043                       29   4.3  
02_05_1145 + 34429060-34429401,34430053-34430967                       29   4.3  
03_06_0040 + 31240164-31241102,31241280-31241897                       28   5.7  
02_02_0106 + 6814391-6817007,6817086-6817462                           28   5.7  
01_01_0419 - 3146851-3147339,3148428-3148663,3148847-3149793,315...    28   5.7  

>03_01_0133 - 1057679-1057880,1058112-1058377
          Length = 155

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +2

Query: 173 CTQ--RLSWPCRSKQPKMRGLEPNQRLPSTLR 262
           CT+  RL WPCR  QP  +GL P  R    L+
Sbjct: 64  CTRGARLGWPCR--QPNTKGLHPWMRASELLK 93


>10_08_0898 + 21424379-21424792,21424974-21425723
          Length = 387

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 10  PKVFXRQCGIKFTSSRLFS*SHLDASPSMGFTLRSN 117
           PK     CG++F S RL       ASP+   T  SN
Sbjct: 296 PKTLCNACGVRFKSGRLMPEYRPAASPTFVLTQHSN 331


>11_02_0131 +
           8651175-8651313,8651567-8651743,8651761-8651879,
           8652179-8652589
          Length = 281

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/45 (33%), Positives = 27/45 (60%)
 Frame = -1

Query: 179 VYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYENNRLEV 45
           +Y P PD L +  Q++QL  ++D++V  +  L +    E ++LEV
Sbjct: 160 MYGPSPDELKQLVQQSQLLDIMDIEVFDLSHLTND-AVEKSKLEV 203


>03_06_0083 - 31532213-31532775,31534016-31534043
          Length = 196

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +1

Query: 367 RALMSGVSSRNR--MAGRGKSGLST*LGWPLKP*PTHSRSPILASSVFPVDPALA 525
           R  +  V +R R  ++G G+ GLS  LG  + P      +P L+SS+   DP LA
Sbjct: 94  RGRVGDVEARRRPEISGDGRRGLSMALGSGVVPRSPMVLTPALSSSLARYDPDLA 148


>02_05_1145 + 34429060-34429401,34430053-34430967
          Length = 418

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 10  PKVFXRQCGIKFTSSRLFS*SHLDASPSMGFTLRSN 117
           PK     CG+++ S RLF      ASP+   ++ SN
Sbjct: 353 PKTLCNACGVRYKSGRLFPEYRPAASPTFMPSIHSN 388


>03_06_0040 + 31240164-31241102,31241280-31241897
          Length = 518

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = -1

Query: 164 PDSLSEERQKAQ-LQRMLDLKVNPIDGLASKWDY 66
           PD+ ++   +AQ L+ +LD ++NP+ G A+ WDY
Sbjct: 202 PDADTDMSMEAQELRHVLD-ELNPLIGAANLWDY 234


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 167 IPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYENNRLEV 45
           IP+SLS  R+      +LDL  N I G   +W +++ +L++
Sbjct: 235 IPESLSSLREL----NVLDLSSNKIQGKIPRWIWQHKKLQI 271


>01_01_0419 -
           3146851-3147339,3148428-3148663,3148847-3149793,
           3150258-3150356,3151128-3151501
          Length = 714

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -1

Query: 179 VYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYENNRL 51
           +Y P+PDS ++        R+LDL  N ++GL  K   +N  L
Sbjct: 321 LYGPVPDSFAD----LHFLRVLDLADNDLEGLFPKRILQNRNL 359


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,412,104
Number of Sequences: 37544
Number of extensions: 458290
Number of successful extensions: 1227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)