Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_F13
(659 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82077-6|CAB63334.1| 175|Caenorhabditis elegans Hypothetical pr... 124 6e-29
AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen prot... 30 1.3
AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical... 30 1.7
AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical ... 29 2.2
Z81491-7|CAI46570.1| 184|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine re... 29 3.9
U23139-12|AAU20847.1| 262|Caenorhabditis elegans Hypothetical p... 28 5.1
U39678-10|AAV28360.1| 436|Caenorhabditis elegans Hypothetical p... 27 8.9
U29535-5|AAY55856.1| 159|Caenorhabditis elegans Hypothetical pr... 27 8.9
>Z82077-6|CAB63334.1| 175|Caenorhabditis elegans Hypothetical
protein W09C5.8 protein.
Length = 175
Score = 124 bits (299), Expect = 6e-29
Identities = 62/145 (42%), Positives = 86/145 (59%)
Frame = -1
Query: 488 KIGDREWVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTL 309
K RE VGYG NG Y DR D+ PAIRFR++ I +R KE+ DW+ L+ EEKK L
Sbjct: 29 KAAGRELVGYGANGDNIYQDRLDYWYPAIRFRKEDSVIAPIRAKEQADWKNLSAEEKKLL 88
Query: 308 YRASFCQTFAEFQAPTGEWKGVVGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQ 129
YR SF QT +EF+APTG WK + L + L + + + V VY +P + E ++AQ
Sbjct: 89 YRYSFRQTLSEFEAPTGYWKVISAVILSVLGLCTYYAVLLNVCVYPELPPTFQNEYKEAQ 148
Query: 128 LQRMLDLKVNPIDGLASKWDYENNR 54
++R L L+ G + +DYEN +
Sbjct: 149 VERALVLEKGQFLGAPTHYDYENKK 173
>AF040646-1|AAK31537.1| 530|Caenorhabditis elegans Collagen protein
70 protein.
Length = 530
Score = 30.3 bits (65), Expect = 1.3
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 565 CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVSG*AMVSTASPTM*TGLTSPC-LPSGSVR 389
C GR+ SV +P + PL P +VTV+ + +P G T P P GSV
Sbjct: 182 CVGRNITYSVVTDSPVVPPLVVTGTPSIVTVT--PPSPSVTPGGRPGSTPPATFPPGSVS 239
Query: 388 T 386
T
Sbjct: 240 T 240
>AC024805-16|AAK39336.1| 448|Caenorhabditis elegans Hypothetical
protein Y51H7C.1 protein.
Length = 448
Score = 29.9 bits (64), Expect = 1.7
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 565 CAGRSSMLSVFLSAPGLDPLETLNLPRLVTVSG*AMVSTASPTM*TGLTSPC-LPSGSVR 389
C GR+ SV +P + PL P +VTV+ + +P G T P P GS+
Sbjct: 105 CVGRNITYSVVTDSPVVPPLVVTGTPSIVTVT--PPSPSVTPGGRPGSTPPATFPPGSIS 162
Query: 388 T 386
T
Sbjct: 163 T 163
>AL117206-4|CAB60447.1| 447|Caenorhabditis elegans Hypothetical
protein Y67A10A.6 protein.
Length = 447
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Frame = -3
Query: 618 DFRTIQAQFFQQNGQLXDAPGAHQCYPCS-CLRQGWIHWKH 499
DF + F ++ + PG+ Q PCS C G IH H
Sbjct: 119 DFEVMPGHLFVDQVRVFEMPGSSQINPCSACNSDGTIHCFH 159
>Z81491-7|CAI46570.1| 184|Caenorhabditis elegans Hypothetical
protein D1086.11 protein.
Length = 184
Score = 29.1 bits (62), Expect = 2.9
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = -1
Query: 230 LVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASKW---DYEN 60
++ L + ++ V+ SP+ S EE QK LD++ NP D KW DY++
Sbjct: 1 MIWQVLITLVVLSATVYSESPLTPSKIEECQKT-CGVPLDIRTNPDDTKCKKWNNCDYDD 59
Query: 59 NR 54
+
Sbjct: 60 RK 61
>AF016419-8|AAG24053.1| 293|Caenorhabditis elegans Serpentine
receptor, class x protein6 protein.
Length = 293
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/41 (34%), Positives = 20/41 (48%)
Frame = +3
Query: 27 PVRYQIYFQSVVFIIPLGCKSIDGVHLKVQHSLELSLLPLF 149
P I+F SV F++ L C S ++L L+ SL F
Sbjct: 232 PADQPIWFSSVPFLVTLNCSSNSVIYLMYNTELQKSLKSCF 272
>U23139-12|AAU20847.1| 262|Caenorhabditis elegans Hypothetical
protein F13H8.1b protein.
Length = 262
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = -1
Query: 170 PIPDSLSEERQKAQLQRMLDLKVNPIDGLASKWD--YENNRLEVNLIPHWRXNTL 12
P +++ EER + +++ + I+ + Y + E IPHW+ N L
Sbjct: 157 PTKETIQEERNRVEIENQYKKTLEKIEMAKQHYSPQYFREQFEREGIPHWKRNLL 211
>U39678-10|AAV28360.1| 436|Caenorhabditis elegans Hypothetical
protein C39D10.11 protein.
Length = 436
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 216 FGCLDLHGHESLCVQSYS*LIE*REAEGSAPE 121
FGC D HG + LC+ L+ + +G+ E
Sbjct: 10 FGCFDYHGAKLLCIDEAKNLVLISQTDGTDVE 41
>U29535-5|AAY55856.1| 159|Caenorhabditis elegans Hypothetical
protein C25H3.15 protein.
Length = 159
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/56 (26%), Positives = 28/56 (50%)
Frame = -3
Query: 651 KLXNFXSVGECDFRTIQAQFFQQNGQLXDAPGAHQCYPCSCLRQGWIHWKH*TCQD 484
KL + ++G C+ +++AQ ++ + H Y RQ W+ W++ TC D
Sbjct: 73 KLKTYCALG-CE-ESLEAQLVKKIPSNSPSCVQHYTYNLERRRQDWLLWRNGTCLD 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,840,804
Number of Sequences: 27780
Number of extensions: 364642
Number of successful extensions: 1007
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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