Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F09
         (727 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5C5M1 Cluster: SJCHGC03891 protein; n=1; Schistosoma j...    35   1.8  
UniRef50_Q4T5K3 Cluster: Chromosome 18 SCAF9219, whole genome sh...    33   9.5  

>UniRef50_Q5C5M1 Cluster: SJCHGC03891 protein; n=1; Schistosoma
           japonicum|Rep: SJCHGC03891 protein - Schistosoma
           japonicum (Blood fluke)
          Length = 219

 Score = 35.1 bits (77), Expect = 1.8
 Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = -3

Query: 590 F*ILFLHLVCDESRKVCMCYEQSNILKSNLAISLTYGLTYIFCKLSKPFLAY*HVVTLSS 411
           F ++ L L+   + + C CY  S IL +N   ++T     I C L++   +Y +   +S 
Sbjct: 13  FNLVLLLLIYKSNNERCFCYLNSTILHNNNDNNITNVKQLIHCSLTQSSSSYNYTEEMSC 72

Query: 410 VTYIKFIHM--YVPINSDIHITI 348
               KF+ +  Y+  +S +H++I
Sbjct: 73  QRVDKFVCIGPYLSNDSYVHLSI 95


>UniRef50_Q4T5K3 Cluster: Chromosome 18 SCAF9219, whole genome
           shotgun sequence; n=1; Tetraodon nigroviridis|Rep:
           Chromosome 18 SCAF9219, whole genome shotgun sequence -
           Tetraodon nigroviridis (Green puffer)
          Length = 1745

 Score = 32.7 bits (71), Expect = 9.5
 Identities = 13/41 (31%), Positives = 26/41 (63%)
 Frame = -3

Query: 194 LVSDNGIKNCFLCNWKNSIH*CLLVIAKLHLFFFIEHQLLV 72
           ++ +N     FLCNW N+++  +L+   + +FFFI  Q+++
Sbjct: 320 IIFNNNNNEIFLCNWGNTLN--ILLYVTVSIFFFIFSQIVL 358


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 621,464,145
Number of Sequences: 1657284
Number of extensions: 11792081
Number of successful extensions: 20234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20231
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 59090914597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)