Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F09
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-4|CAB07278.1|  313|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical pr...    31   0.63 
Z81449-6|CAB03764.2|  489|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81449-5|CAB03762.2|  488|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>Z92812-4|CAB07278.1|  313|Caenorhabditis elegans Hypothetical
           protein T03E6.4 protein.
          Length = 313

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 500 AISLTYGLTYIFCKLSKPFLAY*H--VVTLSSVTYIKFIHMYVPI 372
           +I++ Y +T I C +SK  L   H   VTLS  T + F+ MY P+
Sbjct: 219 SINIYYFMTSIQCHMSKRTLELNHQLFVTLSFQTLLPFVMMYSPV 263


>Z92812-1|CAB07276.1|  334|Caenorhabditis elegans Hypothetical
           protein T03E6.1 protein.
          Length = 334

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 500 AISLTYGLTYIFCKLSKPFLAY*H--VVTLSSVTYIKFIHMYVPI 372
           +I++ Y +T I C +SK  L   H   VTLS  T + F+ MY P+
Sbjct: 219 SINIYYFMTSIQCHMSKRTLELNHQLFVTLSFQTLLPFVMMYSPV 263


>Z81449-6|CAB03764.2|  489|Caenorhabditis elegans Hypothetical
           protein C46F11.5b protein.
          Length = 489

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 509 FLKCYFARSTYILSLTHHRPNVKIRFKILWNLCVL 613
           FL C F +    L  T HR  + +R  ILW +C L
Sbjct: 297 FLLCQFEKLRCWLRDTLHRIAISVRDSILWPICCL 331


>Z81449-5|CAB03762.2|  488|Caenorhabditis elegans Hypothetical
           protein C46F11.5a protein.
          Length = 488

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 509 FLKCYFARSTYILSLTHHRPNVKIRFKILWNLCVL 613
           FL C F +    L  T HR  + +R  ILW +C L
Sbjct: 297 FLLCQFEKLRCWLRDTLHRIAISVRDSILWPICCL 331


>Z74026-4|CAA98416.5|  774|Caenorhabditis elegans Hypothetical
           protein B0240.2 protein.
          Length = 774

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +2

Query: 497 LLNCFLKCYFARSTYILSLTHHRPNVKIRFKILWNLCVLRRR 622
           L  C LK YF R T +L+       V+IR   L+N  +  RR
Sbjct: 604 LFLCRLKAYFGRQTLVLADYFFPNRVRIRALSLYNKILQSRR 645


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,436,821
Number of Sequences: 27780
Number of extensions: 313631
Number of successful extensions: 529
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 529
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)