Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_F08
(787 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 38 0.002
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 35 0.015
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 33 0.046
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 31 0.19
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 29 0.76
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce... 27 3.0
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa... 27 4.0
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 27 4.0
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 26 5.3
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 26 7.0
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch... 25 9.3
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = -3
Query: 692 ASEYNINSMPTFVFVKNGKKLDEFSGAN 609
AS + +MPTFVF +NGK++D +GAN
Sbjct: 67 ASGLGVKAMPTFVFFENGKQIDMLTGAN 94
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 34.7 bits (76), Expect = 0.015
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -3
Query: 692 ASEYNINSMPTFVFVKNGKKLDEFSGAN 609
A+E +++MP+F KNG+K++E GAN
Sbjct: 64 AAEAGVHAMPSFFLYKNGEKIEEIVGAN 91
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 33.1 bits (72), Expect = 0.046
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Frame = +1
Query: 439 KLISSNSLQTLKTFFIYIL-KTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVL---SLS 606
+L++ +S + + +Y+L KTYT +FF SF R ++ L+ C + L
Sbjct: 12 ELLNDSSSNMIWLYEVYMLYKTYTSYFFMSSKSFVRGVKRYLIYFCYCANFIALFRVIFG 71
Query: 607 TLAPENSSSFLPFLT 651
T+ + PF+T
Sbjct: 72 TIFVYSPDGITPFMT 86
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 689 SEYNINSMPTFVFVKNGKKLDEFSG 615
SEY+I PT KNGK++ ++SG
Sbjct: 88 SEYSIRGYPTLNVFKNGKQISQYSG 112
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 29.1 bits (62), Expect = 0.76
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 692 ASEYNINSMPTFVFVKNGKKLDEFSGAN 609
A +++N++P FV + K L SGAN
Sbjct: 66 AESFDVNAVPLFVLIHGAKVLARISGAN 93
>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 406 IFCIPEAANTKKLISSNSLQTLKTFFIYIL 495
++C+P + +LI SNS Q +F+ Y L
Sbjct: 308 LYCLPPSNVMYELIKSNSQQPFVSFYAYAL 337
>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1029
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +1
Query: 412 CIPEAANTK--KLISSNSLQTLKTFFIYILKTY 504
CI TK KL+SSN+LQ + F+ ++K +
Sbjct: 401 CISSTFITKAFKLVSSNTLQAMSHFYATMIKLF 433
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 485 IKNVFNVCNEFEDINFFVFAASGMQKILVLL 393
+KN + EFE I F+ + AS +Q+I L+
Sbjct: 397 LKNKVHTIKEFEKIVFYFYEASDLQQIRSLV 427
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/69 (26%), Positives = 35/69 (50%)
Frame = +1
Query: 370 LFIELFDYNRTNIFCIPEAANTKKLISSNSLQTLKTFFIYILKTYTCFFFKFHLSFHRRL 549
L LF Y +N+ ++ + + + NSL +K+F +LKT+ C + +F + + +L
Sbjct: 317 LLYTLFSYLDSNL----KSTSRDRYLVYNSL--IKSFVNTVLKTFRCRYTQFLIFWASQL 370
Query: 550 RTTLVSIYL 576
I+L
Sbjct: 371 DPEFTDIFL 379
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 451 SNSLQTLKTFFIYILKTYTCFFFKFHLSFHRRLRTTLVSIYLCLRIVVLSLSTL 612
S SL ++ F + +L + CF L+ LR SIYL R+ + +S L
Sbjct: 710 SPSLHSILRFLLLLL-AFLCFAMHILLTPEATLRKWASSIYLSFRLECVFISFL 762
>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +1
Query: 433 TKKLISSNSLQTLKTFFIYILKTYTCFFFKF 525
T SS +L +F+ +++ + CFFF F
Sbjct: 45 TSYWFSSGPFISLSFWFLSLVRGFVCFFFMF 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,223
Number of Sequences: 5004
Number of extensions: 46739
Number of successful extensions: 112
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -