Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F08
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.26 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.26 
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   4.3  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 409 FCIPEAANTKKLISSNSLQTLKTFFIYILKTY--TCFFFKFHLSFHRRLRTTLVSIYLCL 582
           F +P  +  K  +S + L +L  FF+ +++    T       L  +      LVSI +C+
Sbjct: 266 FYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPL-LGKYLIFAMILVSISICV 324

Query: 583 RIVVLSLSTLAPE 621
            +VVL++   +P+
Sbjct: 325 TVVVLNVHFRSPQ 337


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 409 FCIPEAANTKKLISSNSLQTLKTFFIYILKTY--TCFFFKFHLSFHRRLRTTLVSIYLCL 582
           F +P  +  K  +S + L +L  FF+ +++    T       L  +      LVSI +C+
Sbjct: 266 FYLPSDSGEKVTLSISILISLHVFFLLVVEIIPPTSLVVPL-LGKYLIFAMILVSISICV 324

Query: 583 RIVVLSLSTLAPE 621
            +VVL++   +P+
Sbjct: 325 TVVVLNVHFRSPQ 337


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 31  VYNAKYTETIRVCTSCTL 84
           +YN K T TI   T C L
Sbjct: 171 LYNCKRTATITAATDCQL 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,351
Number of Sequences: 438
Number of extensions: 3214
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)