Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F06
         (375 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    43   1e-05
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    26   2.2  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   3.9  
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    25   3.9  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   5.1  
SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces po...    25   5.1  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    24   9.0  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    24   9.0  

>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 43.2 bits (97), Expect = 1e-05
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = -3

Query: 355 ILKNPFYSLEMPIRCELFDTSLHTLLE 275
           +LKNPFY+LEMPI+C+LFD  L   ++
Sbjct: 104 VLKNPFYTLEMPIKCQLFDEQLKRYID 130


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 352 LKNPFYSLEMPIRCELFDTSL 290
           LK  FY  ++P +C  FD+SL
Sbjct: 38  LKKSFYKRQLPKQCLAFDSSL 58


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 169 FLPVTMSFS*TKRKFVQYLRLXGVPRDGLYLRCGI 65
           F  +TMS + ++R  V +LRL  V  D   L  G+
Sbjct: 818 FFSITMSSNLSERSLVNFLRLLHVVSDNWELNEGL 852


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 352 LKNPFYSLEMPIRCELFDTSLHTL 281
           L +PFY    PIR + FD  + ++
Sbjct: 108 LMSPFYQPNQPIRSQAFDLKVRSI 131


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 12/49 (24%), Positives = 27/49 (55%)
 Frame = -3

Query: 334 SLEMPIRCELFDTSLHTLLELVEKSGTANL*LYNNISKVASRTFKFAQV 188
           +L +PI C L  T+     E++  SG   +  ++++ + A +  +F++V
Sbjct: 369 NLNIPIICRLQGTNQGAAKEVINNSG-LRIFSFDDLDEAAKKACRFSRV 416


>SPCPB16A4.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 5.1
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 297 HLYTHCWN*LRSLGLLIYN 241
           H ++ CW  +R  G+ IYN
Sbjct: 237 HRWSKCWAVVRGYGMTIYN 255


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 16/53 (30%), Positives = 26/53 (49%)
 Frame = -3

Query: 355 ILKNPFYSLEMPIRCELFDTSLHTLLELVEKSGTANL*LYNNISKVASRTFKF 197
           +L+N   S+ + I   ++D  L TLL+  E S   +     +I  V+ R F F
Sbjct: 486 LLRNMGASVGISIGAVIYDQQLTTLLKGTEYSTGLSYSQIASIPSVSERNFVF 538


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 23.8 bits (49), Expect = 9.0
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = -3

Query: 196 AQVSTIINHFLP-VTMSFS*--TKRKFVQY-LRLXGVPRDGLYLRCGIYPLAIF*NKYNV 29
           AQ++ I++  +  VT+ F+   TK     Y   L GV     YL CG++ ++ F +  N 
Sbjct: 74  AQMTLILSPLVMLVTIPFTGKETKNSIASYDWNLTGVAARLGYLSCGLFFVSYFFSLKNN 133

Query: 28  KTCLXL 11
             CL L
Sbjct: 134 PFCLML 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,410,863
Number of Sequences: 5004
Number of extensions: 24278
Number of successful extensions: 60
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 120195862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)