Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F06
         (375 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024     45   2e-05
06_01_0367 - 2636487-2636498,2636655-2636724,2636831-2636937,263...    44   3e-05
08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626     27   6.3  
04_01_0490 - 6440176-6440448,6440785-6441074,6441156-6441304,644...    27   6.3  

>07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024
          Length = 143

 Score = 45.2 bits (102), Expect = 2e-05
 Identities = 17/27 (62%), Positives = 23/27 (85%)
 Frame = -3

Query: 355 ILKNPFYSLEMPIRCELFDTSLHTLLE 275
           +LKNPFY +EMPIRCELFD +L  +++
Sbjct: 108 VLKNPFYEMEMPIRCELFDLNLAQVIQ 134


>06_01_0367 -
           2636487-2636498,2636655-2636724,2636831-2636937,
           2637208-2637226,2637383-2637470,2638175-2638303,
           2638428-2638506,2639658-2639720,2640437-2640535,
           2641583-2641740,2642926-2643094,2643174-2643239
          Length = 352

 Score = 44.4 bits (100), Expect = 3e-05
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = -3

Query: 355 ILKNPFYSLEMPIRCELFDTSL 290
           +LKNPFY +EMPIRCELFD +L
Sbjct: 108 VLKNPFYEMEMPIRCELFDLNL 129


>08_02_1119 - 24436942-24437565,24438380-24438502,24439264-24439626
          Length = 369

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 74  LWYLSTCNILKQV*CQDL 21
           LW   TCN++ Q+ C+DL
Sbjct: 349 LWVGDTCNLISQLVCKDL 366


>04_01_0490 -
           6440176-6440448,6440785-6441074,6441156-6441304,
           6441432-6441890,6441973-6442269,6442604-6443502,
           6443793-6443827,6443984-6444078,6444184-6444247,
           6446099-6446175,6446330-6446514
          Length = 940

 Score = 26.6 bits (56), Expect = 6.3
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 116 VLHKFSFCLTETHSDW*KMVNNGTNL 193
           + H+FSFC+ +   DW +  N  ++L
Sbjct: 51  ISHRFSFCVADPTEDWNEAFNYTSDL 76


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,465,329
Number of Sequences: 37544
Number of extensions: 134748
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 600754600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)