Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F06
         (375 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...    47   5e-06
Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical pr...    29   1.1  
AB070577-1|BAC66472.1|  396|Caenorhabditis elegans L-3,4-dihydro...    29   1.1  
AL034393-22|CAD36499.1|  655|Caenorhabditis elegans Hypothetical...    26   7.6  
AL034393-21|CAA22320.2|  681|Caenorhabditis elegans Hypothetical...    26   7.6  
AF497833-1|AAM18111.1|  655|Caenorhabditis elegans putative Na-H...    26   7.6  
AF497832-1|AAM18110.1|  681|Caenorhabditis elegans putative Na-H...    26   7.6  

>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score = 46.8 bits (106), Expect = 5e-06
 Identities = 20/34 (58%), Positives = 26/34 (76%)
 Frame = -3

Query: 352 LKNPFYSLEMPIRCELFDTSLHTLLELVEKSGTA 251
           LKNPFYS++MPIR + FD ++ TLLE  EK+  A
Sbjct: 188 LKNPFYSIDMPIRAQKFDEAIKTLLERAEKNNGA 221


>Z92775-3|CAB62778.2|  396|Caenorhabditis elegans Hypothetical
           protein C06H5.7 protein.
          Length = 396

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 165 RKWLIMVLTCANLKVRLATLLILLYNYKLAV 257
           RKW  M   C NL +   T+L+L+ +Y LAV
Sbjct: 145 RKWFTM-RRCVNLMIISWTILVLMVSYTLAV 174


>AB070577-1|BAC66472.1|  396|Caenorhabditis elegans
           L-3,4-dihydroxyphenylalanine receptorprotein.
          Length = 396

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 165 RKWLIMVLTCANLKVRLATLLILLYNYKLAV 257
           RKW  M   C NL +   T+L+L+ +Y LAV
Sbjct: 145 RKWFTM-RRCVNLMIISWTILVLMVSYTLAV 174


>AL034393-22|CAD36499.1|  655|Caenorhabditis elegans Hypothetical
           protein Y18D10A.6b protein.
          Length = 655

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -3

Query: 235 NNISKVASRTFK--FAQVSTII--NHFLPVTMSFS*TKRKFVQYLRLXGVPRDGLYLRCG 68
           +N+S +A  TF+  F  +S +   + F  + M+F   K  F  +L    V    L   C 
Sbjct: 357 HNVSPIAQITFRHTFRTISFVAETSTFAYIGMAFFTIKLNFAPWLIFWSVVLCLLGRACN 416

Query: 67  IYPLAIF*NK 38
           ++PLA   N+
Sbjct: 417 VFPLAYLVNQ 426


>AL034393-21|CAA22320.2|  681|Caenorhabditis elegans Hypothetical
           protein Y18D10A.6a protein.
          Length = 681

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -3

Query: 235 NNISKVASRTFK--FAQVSTII--NHFLPVTMSFS*TKRKFVQYLRLXGVPRDGLYLRCG 68
           +N+S +A  TF+  F  +S +   + F  + M+F   K  F  +L    V    L   C 
Sbjct: 383 HNVSPIAQITFRHTFRTISFVAETSTFAYIGMAFFTIKLNFAPWLIFWSVVLCLLGRACN 442

Query: 67  IYPLAIF*NK 38
           ++PLA   N+
Sbjct: 443 VFPLAYLVNQ 452


>AF497833-1|AAM18111.1|  655|Caenorhabditis elegans putative Na-H
           exchanger isoform 8b protein.
          Length = 655

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -3

Query: 235 NNISKVASRTFK--FAQVSTII--NHFLPVTMSFS*TKRKFVQYLRLXGVPRDGLYLRCG 68
           +N+S +A  TF+  F  +S +   + F  + M+F   K  F  +L    V    L   C 
Sbjct: 357 HNVSPIAQITFRHTFRTISFVAETSTFAYIGMAFFTIKLNFAPWLIFWSVVLCLLGRACN 416

Query: 67  IYPLAIF*NK 38
           ++PLA   N+
Sbjct: 417 VFPLAYLVNQ 426


>AF497832-1|AAM18110.1|  681|Caenorhabditis elegans putative Na-H
           exchanger isoform 8a protein.
          Length = 681

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = -3

Query: 235 NNISKVASRTFK--FAQVSTII--NHFLPVTMSFS*TKRKFVQYLRLXGVPRDGLYLRCG 68
           +N+S +A  TF+  F  +S +   + F  + M+F   K  F  +L    V    L   C 
Sbjct: 383 HNVSPIAQITFRHTFRTISFVAETSTFAYIGMAFFTIKLNFAPWLIFWSVVLCLLGRACN 442

Query: 67  IYPLAIF*NK 38
           ++PLA   N+
Sbjct: 443 VFPLAYLVNQ 452


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,799,530
Number of Sequences: 27780
Number of extensions: 135351
Number of successful extensions: 227
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)