Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F03
         (724 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    28   1.6  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   8.3  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    25   8.3  

>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +2

Query: 479 LMPVKILCSYILWIFSSYIIYYSLRIFV 562
           ++P  ++ S+I+WIF S ++    R+F+
Sbjct: 10  ILPTLLILSFIIWIFHSVMVDKDWRLFM 37


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -1

Query: 667 DTFLTEINNFCC-FXIYLCIYSF 602
           D+FL+++ N  C F +Y   YSF
Sbjct: 49  DSFLSQLENILCFFLVYRTTYSF 71


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 8/24 (33%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -1

Query: 184 FVYIAFTFVY-IIKFFILFTLYVF 116
           ++Y+A +F+Y ++ FF +F  +V+
Sbjct: 143 YIYVAVSFIYCVMAFFTIFNNHVY 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,316
Number of Sequences: 5004
Number of extensions: 38830
Number of successful extensions: 100
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)