Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F03
         (724 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine re...    29   4.4  
AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math...    29   4.4  
Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical p...    28   7.8  
Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical p...    28   7.8  
AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine pyro...    28   7.8  

>AL021493-2|CAA16393.1|  382|Caenorhabditis elegans Hypothetical
           protein Y51A2B.2 protein.
          Length = 382

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
 Frame = -1

Query: 217 VFFSFPVTDTIF----VYIAFTFVYIIKFFILFTLYVFNC 110
           VFF   +T+ +F    +YI    +YI  F + FTL + NC
Sbjct: 175 VFFLRNLTEQLFESKIIYIWLASIYIFSFGVEFTLMISNC 214


>AF100659-3|AAC68969.2|  334|Caenorhabditis elegans Serpentine
           receptor, class z protein23 protein.
          Length = 334

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 220 LVFFSFPVTDTIFVYIAFTFVYIIKFFILFT--LYVFN 113
           L++  F    +I++Y    FV+++ + ILF   +YVFN
Sbjct: 5   LLYLEFCDGGSIYLYFISVFVFLVIYLILFPFYMYVFN 42


>AC006648-12|AAF39861.4|  418|Caenorhabditis elegans Btb and math
           domain containingprotein 19 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +2

Query: 581 NIVGKCIEGINTEINXKAAKVINFRQKSIVSLLKIVSWKIY 703
           N+V  CIE I++  N KA     ++   +++ L ++S +IY
Sbjct: 378 NLVNNCIEKIDSIDNIKAKLAAGWKDSILLADLLVISLEIY 418


>Z11115-18|CAI46594.1|  243|Caenorhabditis elegans Hypothetical
           protein ZK637.9b protein.
          Length = 243

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 566 FILFINIVGKCIEGINTEINXKAAKVINFRQKSIVSLLKIVSW 694
           F+ + +I+    + IN +I+ K AKV++   +    L K V W
Sbjct: 59  FVEWPHIICGDFDSINKQIDTKNAKVVHLPDQDYTDLSKSVQW 101


>Z11115-17|CAA77455.3|  228|Caenorhabditis elegans Hypothetical
           protein ZK637.9a protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 566 FILFINIVGKCIEGINTEINXKAAKVINFRQKSIVSLLKIVSW 694
           F+ + +I+    + IN +I+ K AKV++   +    L K V W
Sbjct: 59  FVEWPHIICGDFDSINKQIDTKNAKVVHLPDQDYTDLSKSVQW 101


>AY513235-1|AAS21678.1|  228|Caenorhabditis elegans thiamine
           pyrophosphokinase protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 566 FILFINIVGKCIEGINTEINXKAAKVINFRQKSIVSLLKIVSW 694
           F+ + +I+    + IN +I+ K AKV++   +    L K V W
Sbjct: 59  FVEWPHIICGDFDSINKQIDTKNAKVVHLPDQDYTDLSKSVQW 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,237,755
Number of Sequences: 27780
Number of extensions: 205451
Number of successful extensions: 589
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)