Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_F02
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 31 0.094
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 29 0.38
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.38
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi... 29 0.50
SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 27 2.0
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 6.2
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 25 6.2
SPAC1B2.04 |cox6||cytochrome c oxidase subunit VI|Schizosaccharo... 25 8.2
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 8.2
>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 31.5 bits (68), Expect = 0.094
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -3
Query: 284 FQVANSTQPLKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEM 120
FQ+ + Q + +E LN+ Y Y E+ P P S ++ E + E E EM
Sbjct: 89 FQLVDERQIEEPGEDEMALNAGGYYPYAEEVPPPSYPSLEEENEGNEEIEESEEM 143
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 29.5 bits (63), Expect = 0.38
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Frame = +1
Query: 40 VAPDIITNIATGTIYIQYLARNDLLSFISPFSRA--SLSRSIFCIYDAVSG--TGACSIY 207
V+PDI T++ Y YL RN + SFI FSRA L S + + +SG G C +
Sbjct: 1476 VSPDISTHL-----YKYYLRRNFVSSFIDAFSRAFSELLSSNKDVLEVLSGLEAGQCLLI 1530
Query: 208 LK*NLELSLYSLV 246
+L+++S++
Sbjct: 1531 TFAQNKLTVHSVL 1543
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.5 bits (63), Expect = 0.38
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 347 NGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYK 231
NG+ V+N W+L NG I + +A++ +K+ T K
Sbjct: 653 NGIQRVVNYWLLHNGFSIGIGDTIADA-DTMKEVTRTVK 690
>SPBC21H7.07c |his5||imidazoleglycerol phosphate
dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 29.1 bits (62), Expect = 0.50
Identities = 13/45 (28%), Positives = 29/45 (64%)
Frame = -3
Query: 257 LKQATNEYKLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGE 123
+++ TNE K++ L ++AP+P+ +++I ++ + A +KGE
Sbjct: 6 VERNTNETKISVAIAL---DKAPLPEESNFIDELITSKHANQKGE 47
>SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 103 NDLLSFISPFSRASLSRSIFCIYDAVSGTGACSIYL 210
N L+SF +PF +AS+ ++ + + TGA I+L
Sbjct: 419 NFLISFFTPFIQASIGFKYGYVFASCNLTGAIVIFL 454
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 533 LKSIRTGVPIIDQILFNEKHL 471
L +R +PI+D+ F EKHL
Sbjct: 1380 LNFLRNFIPILDEQKFREKHL 1400
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 25.4 bits (53), Expect = 6.2
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -3
Query: 350 ENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKL 228
EN + + ++PNG IAVN Q N LK A E+KL
Sbjct: 477 ENRFGESVTVDLIPNGRNIAVNNQ--NKMNYLK-ALTEHKL 514
>SPAC1B2.04 |cox6||cytochrome c oxidase subunit
VI|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 25.0 bits (52), Expect = 8.2
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -3
Query: 452 ANEDEFYSIKTTITTGE-NSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVIAVNFQV 276
AN +S ++ E N+K ++ S+V+ Q L+ GL++ I+P+ VI +
Sbjct: 30 ANRQVRFSSNHGVSLEEINTKYNDFFSNVQDQFELQRGLNNCFAYDIVPSSDVIEQALRA 89
Query: 275 ANSTQPLKQATNEYK 231
A A ++
Sbjct: 90 ARRVNDFPTAVRIFE 104
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 8.2
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -3
Query: 416 ITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPN 306
+ EN+KG+E S K +++ S ++N ++ P+
Sbjct: 246 LANSENNKGSEAGVSAKTNPDMDSDSSAIVNEFLKPD 282
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,121,936
Number of Sequences: 5004
Number of extensions: 38560
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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