Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F02
         (589 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_03_0008 + 8901817-8902146,8903058-8903120,8903226-8903321,890...    68   6e-12
07_03_0708 - 20865786-20867153                                         29   2.1  
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581...    29   2.7  
06_03_0123 - 16924074-16926089                                         27   8.4  

>11_03_0008 +
           8901817-8902146,8903058-8903120,8903226-8903321,
           8903924-8903971,8904558-8904629,8905373-8905431,
           8905582-8905672,8905749-8905886
          Length = 298

 Score = 67.7 bits (158), Expect = 6e-12
 Identities = 55/184 (29%), Positives = 88/184 (47%), Gaps = 10/184 (5%)
 Frame = -3

Query: 542 SITLKSIRTGVPIIDQILFNEKHL-----EALKKLANEDEFYSIKTTITTGENSKGTEYL 378
           S  LKS   G   + ++ F    L     +A KKL +ED FYSI+      + ++    +
Sbjct: 99  SARLKSSAHGSQTLTKLRFTRNELTGDEKDAFKKLLDEDGFYSIRLLSNVLDPARKDYVV 158

Query: 377 SSVKAQAFLENGLSDVINAWILPNGAVIAVNF-QVANSTQPLK-QATNEYKLNSKFYLRY 204
           SS+KA+      L + I    +    ++AVN+  V   T P   +  +++  NS   L+ 
Sbjct: 159 SSIKARCIPRESLDEHIVIH-MDGVNILAVNYGSVGGCTYPRPVKMPSKWVFNSYTVLKT 217

Query: 203 IEQAPVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVPVAIFVM--ISGATN-P 33
            EQAP   T S++ ++        +      +SF AKYWMYI+P+ + VM  ++ A N P
Sbjct: 218 SEQAP--RTPSFVDQLIEAENGLGEVVKSPEKSFWAKYWMYIIPLGLIVMNAVTAAANMP 275

Query: 32  EASA 21
           E  A
Sbjct: 276 EEQA 279


>07_03_0708 - 20865786-20867153
          Length = 455

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 479 KHLEALKKLANEDEFYSIKTTITTGENSKGTEYLSSVKAQAFLENG 342
           KH EA+++  +   F S   T   G+ +      SSV  QA LENG
Sbjct: 42  KHSEAVRRDGHRLAFLSYAATAAAGKATTTGTNSSSVNVQAQLENG 87


>06_03_0650 + 23157130-23157582,23157687-23157898,23157982-23158128,
            23158214-23158347,23158442-23158551,23158711-23158817,
            23159045-23159183,23159286-23159402,23159737-23159844,
            23159927-23159998,23160108-23160230,23160336-23160495,
            23160585-23160706,23160825-23160962,23161042-23161184,
            23161305-23161367,23161567-23161630,23161709-23161844,
            23162123-23162196,23162764-23162858,23162951-23162982,
            23163104-23163276
          Length = 973

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 23/112 (20%), Positives = 43/112 (38%)
 Frame = -3

Query: 548  RGSITLKSIRTGVPIIDQILFNEKHLEALKKLANEDEFYSIKTTITTGENSKGTEYLSSV 369
            R ++ L +I   +P++  I       +       ED   SI   + + +  + T+Y   V
Sbjct: 672  RNTVLLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPEVTKYAGLV 731

Query: 368  KAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQATNEYKLNSKFY 213
             AQA  +  + D+   W  P    +     +       ++AT +  L   FY
Sbjct: 732  CAQAHRQELIQDLYKTWHDPQRGTV-TGGMIRELLISFRKATGQKPLRIIFY 782


>06_03_0123 - 16924074-16926089
          Length = 671

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/51 (33%), Positives = 21/51 (41%)
 Frame = +1

Query: 49  DIITNIATGTIYIQYLARNDLLSFISPFSRASLSRSIFCIYDAVSGTGACS 201
           D I+  A  T Y+Q     + L F     R  L  SIFCI   +    A S
Sbjct: 374 DTISWTALLTCYVQNDLSQEALFFFREMVRKGLESSIFCITSVLRACSATS 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,415,877
Number of Sequences: 37544
Number of extensions: 210125
Number of successful extensions: 637
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)