Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_F02
(589 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL032637-7|CAA21610.1| 236|Caenorhabditis elegans Hypothetical ... 88 4e-18
U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z82262-5|CAE17771.1| 679|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical p... 27 7.5
U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical pr... 27 7.5
U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical p... 27 7.5
AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily a... 27 7.5
AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily a... 27 7.5
Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical pr... 27 9.9
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr... 27 9.9
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 27 9.9
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 27 9.9
>AL032637-7|CAA21610.1| 236|Caenorhabditis elegans Hypothetical
protein Y43F8C.7 protein.
Length = 236
Score = 88.2 bits (209), Expect = 4e-18
Identities = 37/57 (64%), Positives = 46/57 (80%)
Frame = -3
Query: 191 PVPDTASYIQKMERDREAREKGEMKDNRSFLAKYWMYIVPVAIFVMISGATNPEASA 21
P PDTA+++QKMER++ A++ G DNRSFLAKYWMYIVPV +F +IS A NPEA A
Sbjct: 175 PTPDTAAFVQKMEREKRAKQHGADADNRSFLAKYWMYIVPVVLFAVISSAVNPEAGA 231
>U42833-2|AAA83576.1| 1276|Caenorhabditis elegans Hypothetical protein
ZK430.5 protein.
Length = 1276
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Frame = -3
Query: 278 VANSTQPLKQATNEY-KLNSKFYLRYIEQAPVPDTASYIQKMERDREAREKGEMKDNRSF 102
V+ + + A+N+ L S+ + + + + +T S +QK A + E KDN
Sbjct: 1175 VSKTPKQKSLASNQILTLRSETMNQEVPRKAITETRSKVQKAPPHPTASQNEEEKDNLKR 1234
Query: 101 LAKYWMYIVPVAIFVMISGATNPEASAPAGR 9
K + + + F GA P + P+ R
Sbjct: 1235 TRKRKLLVSTIPNFCKEHGAKKPRTTRPSSR 1265
>Z82262-5|CAE17771.1| 679|Caenorhabditis elegans Hypothetical
protein C43F9.10 protein.
Length = 679
Score = 29.5 bits (63), Expect = 1.9
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 113 YPSFLPFHVPLCHVPFFVYMMQYRELELAQYILS 214
Y + + + L H P +VY+ Y E +LA Y+L+
Sbjct: 314 YTGDISYSLYLVHWPIYVYVKHYYENQLAAYLLA 347
>Z74045-4|CAA98554.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 247 ACFSGCVELATWKLTAITAPLGSIH 321
ACFS C E W LT I ++H
Sbjct: 465 ACFSKCAEFHDWLLTKIINAENAVH 489
>Z74032-11|CAA98469.2| 924|Caenorhabditis elegans Hypothetical
protein T27F2.2 protein.
Length = 924
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 247 ACFSGCVELATWKLTAITAPLGSIH 321
ACFS C E W LT I ++H
Sbjct: 465 ACFSKCAEFHDWLLTKIINAENAVH 489
>U80029-9|AAB37588.1| 459|Caenorhabditis elegans Hypothetical
protein T20D4.9 protein.
Length = 459
Score = 27.5 bits (58), Expect = 7.5
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 539 ITLKSIRTGVPIIDQILFNEKHLEALKKLANEDEFYSIKTTI 414
+T+KS+ T I+D F E H E +KK N ++F + T+
Sbjct: 62 MTVKSLDTA--IVDMEYFFETHYEYIKKKNNSEKFSFMVETL 101
>U41263-13|AAC24428.2| 1844|Caenorhabditis elegans Hypothetical
protein T19D12.1 protein.
Length = 1844
Score = 27.5 bits (58), Expect = 7.5
Identities = 17/62 (27%), Positives = 33/62 (53%)
Frame = -3
Query: 428 IKTTITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPNGAVIAVNFQVANSTQPLKQ 249
I TT++ + T+ L+S AQ+ G+S V ++ +P G+ + + Q S QP +
Sbjct: 875 ICTTVSNTFGTSTTQGLTSSSAQSTASTGVSTVASSTTIPQGS-SSSSPQSPTSAQPAQS 933
Query: 248 AT 243
++
Sbjct: 934 SS 935
>AC006712-6|AAO21405.1| 765|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform b protein.
Length = 765
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 321 CIDNIRETIFQKCLSFN 371
CID+I ET+FQ C +FN
Sbjct: 106 CIDDI-ETVFQNCYTFN 121
>AC006712-5|AAK39326.2| 851|Caenorhabditis elegans Temporarily
assigned gene nameprotein 332, isoform a protein.
Length = 851
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 321 CIDNIRETIFQKCLSFN 371
CID+I ET+FQ C +FN
Sbjct: 106 CIDDI-ETVFQNCYTFN 121
>Z71178-6|CAA94880.2| 1185|Caenorhabditis elegans Hypothetical protein
B0024.8 protein.
Length = 1185
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 431 SIKTTITTGENSKGTEYLSSVKAQAFLENGLSDVINAWILPN 306
S+K + +N K T+YL+ A+ E L D+ + + PN
Sbjct: 1134 SVKNSAPDVDNKKATQYLAKTLAKLIGEKQLLDLATSELDPN 1175
>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical
protein T19A5.1 protein.
Length = 1280
Score = 27.1 bits (57), Expect = 9.9
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +1
Query: 49 DIITNIATGTIYIQYLARNDLLSFISP-FSRASLSRSIFCIYDAVSGTGACSIYLK*NLE 225
D T ATG ++ R + P + ++ SI + + + I LK +
Sbjct: 246 DAFTCYATGIHFVNDENRAPHIGAFHPSHAEHTIRLSIATLLNRAGYSVEAHIILK---Q 302
Query: 226 LSLYSLVACFSGCVELATWKLTAITAPLGSI 318
L+ + VAC+SG + AT + +T P +I
Sbjct: 303 LTSTNTVACYSGMMHAATGDASVLTGPESAI 333
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 539 ITLK-SIRTGVPIIDQILFNEKHLEALKKLANEDEFYSI 426
IT+K S +T PI+ + N +HLE ++++ + D S+
Sbjct: 95 ITVKNSTKTASPILKDFVKNYEHLENVRRVIHRDNSRSV 133
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 27.1 bits (57), Expect = 9.9
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -3
Query: 539 ITLK-SIRTGVPIIDQILFNEKHLEALKKLANEDEFYSI 426
IT+K S +T PI+ + N +HLE ++++ + D S+
Sbjct: 87 ITVKNSTKTASPILKDFVKNYEHLENVRRVIHRDNSRSV 125
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,127
Number of Sequences: 27780
Number of extensions: 206726
Number of successful extensions: 629
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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