Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_F01
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81037-8|CAI79129.1|  217|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    28   7.9  

>Z81037-8|CAI79129.1|  217|Caenorhabditis elegans Hypothetical
           protein C17E4.11 protein.
          Length = 217

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = +3

Query: 330 YNQTKIEHS*LEVYNFKWVS---FXLLNCSKLPFEVL 431
           Y+Q  IE+  LE  N +W+S     L+NC    F+V+
Sbjct: 73  YSQVLIENGRLEYPNMEWISDDITTLINCESSSFDVV 109


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +1

Query: 598 YTVFIRMLFLQLHLLH*YCKCYSSLHWDRGSCTGTVG 708
           + +FI  LFL   ++  +C+C+  +H    +C  ++G
Sbjct: 47  FALFITCLFLPCFIVCFWCRCFMDVHHRCPNCNKSLG 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,075,198
Number of Sequences: 27780
Number of extensions: 261025
Number of successful extensions: 608
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)