Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_E22
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S...   214   8e-57
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    28   1.3  
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual     27   1.7  
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||...    27   3.0  
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.0  
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1...    26   5.3  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    25   9.2  

>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
           Dim1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 142

 Score =  214 bits (523), Expect = 8e-57
 Identities = 97/130 (74%), Positives = 110/130 (84%)
 Frame = -2

Query: 572 HTSIENVNSDEKQNVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKM 393
           H     ++  E+  VIRFG D D  C+K DEVLY IAEKV N AVIYLVDI EVPDFNKM
Sbjct: 13  HVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYLVDIDEVPDFNKM 72

Query: 392 YELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGLVVS 213
           YELYD  T+MFF+RNKH+MIDLGTGNNNKINWPLEDKQEMIDIIET++RGARKG+GLV+S
Sbjct: 73  YELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIFRGARKGKGLVIS 132

Query: 212 PKDYSTKYRY 183
           PKDYST++RY
Sbjct: 133 PKDYSTRHRY 142


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 554 VNSDEKQNVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITE--VPDFNKMYELY 381
           V  D+K  ++ F  DW   C ++     ++ +  KN   + +V I      D  +++E+ 
Sbjct: 154 VMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVA 213

Query: 380 DPCTVMFF 357
              T+ FF
Sbjct: 214 SFPTIKFF 221


>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 268

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/66 (21%), Positives = 30/66 (45%)
 Frame = +1

Query: 373 HGSYNSYILLKSGTSVMSTKYMTAKFFTFSAMLYNTSSIFIHVGSQSCPNLITFCFSSLF 552
           HG+Y+SY  ++ GTS++  +          ++ Y  S + I   + +    I   F + F
Sbjct: 6   HGNYHSYYSMRGGTSIIDPRLKCLP----DSLFYEASVLDIGCNNGTVSAQIASIFGASF 61

Query: 553 TFSIEV 570
              +++
Sbjct: 62  VLGLDI 67


>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = -2

Query: 512 DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI-M 336
           DW+   +K ++  Y I   +      +  DI   P+  + Y   +   V  F     I +
Sbjct: 366 DWNEN-VKKNDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTIDL 424

Query: 335 IDLGTGNNNKINWPLEDKQEMIDII 261
           +D G    N   WPL   Q  +D++
Sbjct: 425 VDGGEDRENIPLWPLLHPQRFVDVV 449


>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 673

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
 Frame = -2

Query: 512 DWDPTCMKMDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI-M 336
           DW+   +K ++  Y I   +      +  DI   P+  + Y   +   V  F     I +
Sbjct: 366 DWNEN-VKKNDTYYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTIDL 424

Query: 335 IDLGTGNNNKINWPLEDKQEMIDII 261
           +D G    N   WPL   Q  +D++
Sbjct: 425 VDGGEDRENIPLWPLLHPQRFVDVV 449


>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 18/83 (21%), Positives = 33/83 (39%)
 Frame = +1

Query: 331 SIIMCLLRKKNITVHGSYNSYILLKSGTSVMSTKYMTAKFFTFSAMLYNTSSIFIHVGSQ 510
           S+I  L+    +T     N  I L    +     +  A    F  +    +++F+ + S 
Sbjct: 391 SLIASLMTTTPLTTFAQNNGVISLTKCAN-RRAGFFCAVILFFMGLFAKFAAVFVAIPSP 449

Query: 511 SCPNLITFCFSSLFTFSIEVCSK 579
               + TF FSS+    I + S+
Sbjct: 450 VLGGMTTFLFSSVAVSGIAIISQ 472


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 477 YFIHFHTCWVPVVSKPY-NILFLVTVHVFYRSVFKKLCLLRL 599
           +FI FHT  V ++  P+ ++L LV   VF  + + +   LRL
Sbjct: 87  HFISFHTIVVLLLLPPFSHLLVLVYPSVFTTAFYHQKWALRL 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,002
Number of Sequences: 5004
Number of extensions: 53748
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)