Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_E22
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836 205 2e-53
07_01_0725 - 5532803-5533324,5533631-5533657,5534285-5534398,553... 198 3e-51
11_03_0156 - 10878941-10879040,10879993-10880150,10880738-10880872 55 5e-08
06_03_0752 - 24171847-24174321 31 0.58
07_03_0391 - 17587144-17587323,17587460-17587566,17587664-175877... 31 1.0
08_02_1625 + 28336168-28336409,28336491-28336564,28337162-283372... 30 1.8
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 29 4.1
01_05_0513 - 22864657-22867899 27 9.5
>10_08_0434 + 17896432-17896551,17896709-17896786,17898528-17898836
Length = 168
Score = 205 bits (501), Expect = 2e-53
Identities = 101/147 (68%), Positives = 112/147 (76%), Gaps = 26/147 (17%)
Frame = -2
Query: 545 DEKQNVIRFGHDWDPTCMK--------------------------MDEVLYSIAEKVKNF 444
+E+ +IRFGHDWD TCM+ MDEVL ++AE +KNF
Sbjct: 22 EERLVIIRFGHDWDETCMQICCGDDLDSFARFRILWRELSVYLTTMDEVLAAVAETIKNF 81
Query: 443 AVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDI 264
AVIYLVDITEVPDFN MYELYDP TVMFFFRNKHIMIDLGTGNNNKINW L+DKQE IDI
Sbjct: 82 AVIYLVDITEVPDFNTMYELYDPSTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDI 141
Query: 263 IETVYRGARKGRGLVVSPKDYSTKYRY 183
+ETVYRGARKGRGLV++PKDYSTKYRY
Sbjct: 142 VETVYRGARKGRGLVIAPKDYSTKYRY 168
>07_01_0725 -
5532803-5533324,5533631-5533657,5534285-5534398,
5534564-5534731,5535951-5536193,5537178-5537261,
5537357-5538117,5539637-5539730,5540633-5540899,
5541311-5541316,5542538-5542657
Length = 801
Score = 198 bits (483), Expect = 3e-51
Identities = 90/110 (81%), Positives = 99/110 (90%), Gaps = 2/110 (1%)
Frame = -2
Query: 545 DEKQNVIRFGHDWDPTCMK--MDEVLYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPC 372
+E+ +IRFGHDWD TCM+ MDEVL ++AE +KNFAVIYLVDITEVPDFN MYELYDP
Sbjct: 22 EERLVIIRFGHDWDETCMQGMMDEVLAAVAETIKNFAVIYLVDITEVPDFNTMYELYDPS 81
Query: 371 TVMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIETVYRGARKGRGL 222
TVMFFFRNKHIMIDLGTGNNNKINW L+DKQE IDI+ETVYRGARKGRGL
Sbjct: 82 TVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGARKGRGL 131
>11_03_0156 - 10878941-10879040,10879993-10880150,10880738-10880872
Length = 130
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/97 (28%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Frame = -2
Query: 542 EKQNVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYLVDI--TEVPDFNKMYELYDPCT 369
+K V+RFG D C+ +D++L + + FA + LVD+ E+ + +++
Sbjct: 24 DKVLVLRFGRADDAACLHLDDILAKSSWDISRFATVALVDMDSEEMQVYIDYFDITLVPA 83
Query: 368 VMFFFRNKHIMIDLGTGNNNKINWPLEDKQEMIDIIE 258
+FFF +H+ +D GT ++ K KQ+ ID++E
Sbjct: 84 TIFFFNAQHMKMDSGTPDHTKWIGSFSSKQDFIDVVE 120
>06_03_0752 - 24171847-24174321
Length = 824
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Frame = -2
Query: 410 PDFNKMY--ELYDPCTVMFF--FRNKHIMIDLGTGNN 312
P +N+ Y E++DPCTV+ F N H+ G GNN
Sbjct: 450 PTWNEQYTWEVFDPCTVITIGVFDNNHLGNGNGNGNN 486
>07_03_0391 -
17587144-17587323,17587460-17587566,17587664-17587742,
17587850-17587939,17588337-17588588,17588748-17588894,
17589071-17589246,17589303-17589394,17589582-17589673
Length = 404
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 309 IVVASPQVNHYVFVAEEEHHCAW 377
+V P+VN ++F EE HH W
Sbjct: 46 VVSLDPEVNRFIFQQEEPHHVQW 68
>08_02_1625 +
28336168-28336409,28336491-28336564,28337162-28337236,
28337433-28337459,28339261-28339634,28339746-28340492
Length = 512
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 311 CCCQSPSQSLCVCCGRRTSLCMDRIIHTFY*NLEP 415
CC Q P + +C T LC DR ++ F+ N P
Sbjct: 439 CCGQGPYNGVGLCTALST-LCPDRSLYVFWDNFHP 472
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/24 (37%), Positives = 18/24 (75%)
Frame = +3
Query: 393 HFIKIWNLCNVN*IYDSKIFYFFR 464
H I++W+LC+V+ I+ ++ + FR
Sbjct: 774 HIIQLWDLCHVSIIHRTQFYLLFR 797
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = -2
Query: 473 YSIAEKVKNFAVIYLVDITEVPDFNKMY--ELYDPCTVM--FFFRNKHIMIDLGTGNNNK 306
Y +A+ K + V + P +N+ Y ++YDPCTV+ F N + G G+ +
Sbjct: 696 YCVAKYGKKWVRTRTVTDSLNPRWNEQYTWQVYDPCTVLTVAVFDNWRMFAFAGAGDEQR 755
Query: 305 INWPLEDKQEMIDIIET 255
++ + + + +E+
Sbjct: 756 QDYRIGKVRVRVSTLES 772
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,083,817
Number of Sequences: 37544
Number of extensions: 292424
Number of successful extensions: 617
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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