Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_E19
         (569 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   5.9  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   7.8  

>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 462 TSQDIECQVRPSMVH--VSFCIFXLRDQYIPYNLL 560
           T  D E  +RPS VH  + +C+      ++P+ LL
Sbjct: 175 TETDAELVIRPSKVHTEIQWCLQNCSLIHVPFELL 209


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 15/51 (29%), Positives = 21/51 (41%)
 Frame = +2

Query: 92  PVSTNTPAISAAGQLCVPD*LVRLTPNTFLYSSCFFSLPIS*LCYNRYPVP 244
           PV    P  SA      P   V + P     S+ F + P+S +  N  P+P
Sbjct: 698 PVEITEPPSSALVSATSPTTNVPIVPEAVHLSTAFSTAPVSTIVSNISPLP 748


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,218,401
Number of Sequences: 5004
Number of extensions: 41991
Number of successful extensions: 80
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)