Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_E16
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    27   2.5  
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar...    26   4.4  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    26   5.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   7.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   7.7  

>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -1

Query: 480 RAKTRATWS*SLRRPQGMAGPSRQA-GCHR 394
           R+ ++ +WS  LRRP     P RQ+ G HR
Sbjct: 244 RSPSKGSWSSILRRPSLTYSPKRQSTGLHR 273


>SPAC13G6.06c |||glycine cleavage complex subunit
           P|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1017

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 455 VDPFDAHKAWQDHLDRLAAIDRLYPSRYGLYLKD 354
           +D  D  +    H D+LAA    YPS +G++  D
Sbjct: 691 LDMQDLKEKASKHADKLAAFMVTYPSTFGIFEPD 724


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 359 KDRAYPITDLTAPLIDPLK--PKSLKGIEYEPDN 264
           K RAYP  D   P++D L+    +L+  EY   N
Sbjct: 379 KYRAYPTYDFACPIVDSLEGVTHALRTTEYRDRN 412


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 17/57 (29%), Positives = 20/57 (35%)
 Frame = -2

Query: 650 YPYSKSIYDDPIAAAERITVPGYRYLPVHREXYGYSPRPXYAHNYPRSLDYYRPIYH 480
           YP  K  Y    +A +    PG       R     SP    A    R  DY R +YH
Sbjct: 676 YPAKKGEYHMIYSALQSERFPGPTPFSPFRSFQELSPSEQAAMVQKRIADYSRKVYH 732


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
 Frame = -2

Query: 641 SKSIYDDPIAAAERITVPGYRYLPV---HREXYGYSPRPXYAHNYPRSL 504
           SK+ Y  P    E I     +   V   +   Y + PRP    N PRSL
Sbjct: 597 SKAKYSSPYDLPEEIVQVAQQKRSVSQNYNRQYSFQPRPATPSNPPRSL 645


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,311,915
Number of Sequences: 5004
Number of extensions: 43039
Number of successful extensions: 132
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)