Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_E16
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0674 - 21745321-21746223,21746229-21747608                       31   1.1  
12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232           30   1.5  
06_01_1181 + 10148653-10149405                                         29   2.6  
12_02_0168 + 14827529-14828050                                         29   4.5  
08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714     28   6.0  
01_04_0020 + 15142402-15143421                                         28   6.0  
12_02_0019 - 12366259-12366819,12367653-12367685,12368294-123683...    28   7.9  

>12_02_0674 - 21745321-21746223,21746229-21747608
          Length = 760

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
 Frame = -3

Query: 628 TTTLSLPLRGLRYPXTVTCLSIA--RXTXTPRALXMPTTTLALSIITGQSTTCQDACDVE 455
           T  LS P   +    +   LS A  +   TPR   + T T   S I     T   +    
Sbjct: 498 TGELSTPTSQIPSTASTRELSTATGKIPSTPRTNPLSTAT---SKIPSTPRTSLLSSSTS 554

Query: 454 LIPSTPTRHGRTISTGWLPSTGCT 383
            IPSTP+    + +TG +PST CT
Sbjct: 555 KIPSTPSTCELSTATGKIPSTTCT 578


>12_01_0477 + 3742751-3745200,3747192-3747502,3747886-3748232
          Length = 1035

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = -2

Query: 482 HVPRRVRRGVDPFDAHKAWQDHLDRLAAIDRLYPSR--YGLYLKDRAYPITDLTAPLIDP 309
           +V R   R +D   A ++   HL+R   +DRLYPS+   G  L   AY     ++ L+  
Sbjct: 314 YVERSREREIDRLYAGRSL--HLERDGEMDRLYPSKGVLGADLAPSAY--AGSSSSLLAK 369

Query: 308 LKPKSL-KGIEYEPDN 264
            +P  L  G  YEP N
Sbjct: 370 ERPYRLHDGTSYEPTN 385


>06_01_1181 + 10148653-10149405
          Length = 250

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 584 YRYLPVHREXYGYSPRPXYAHNYPRSLDYYRPIYHVPRRVRRG 456
           +RY+ VH   Y     P   + YP ++    P  HV   VR G
Sbjct: 155 FRYVQVHHPVYAAPGEPVQGYGYPVAMSSALPAPHVHVGVRGG 197


>12_02_0168 + 14827529-14828050
          Length = 173

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 383 GTAGRWQPACRDGPAMPCGRRR 448
           G AGRW+  CR G + P GRRR
Sbjct: 22  GGAGRWR--CRSGRSAPGGRRR 41


>08_02_0058 + 11773402-11773482,11773513-11774197,11774245-11774714
          Length = 411

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +3

Query: 396 DGSQPVEMVLPCLVGVEGINSTSHASWHVVDW 491
           D    V  V  C++ + G+  T++ +W +V+W
Sbjct: 279 DNGLMVSRVESCVIKLPGVMGTANETWSIVEW 310


>01_04_0020 + 15142402-15143421
          Length = 339

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 572 PVHREXYGYSPRPXYAHN 519
           P H++ YGY+ +P YA+N
Sbjct: 256 PPHQQQYGYAGQPPYAYN 273


>12_02_0019 -
           12366259-12366819,12367653-12367685,12368294-12368363,
           12368582-12368712,12369627-12369673,12369803-12369879,
           12369963-12370027,12370105-12370191,12370300-12370389,
           12370972-12371037,12371608-12371664,12371749-12371850,
           12373018-12373554
          Length = 640

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -1

Query: 543 PAPYXCPQLPSLSRLLQANLPRAKTRATWS*SLRRPQ---GMAGPSRQAGCHRPAVPISL 373
           P P   P   +  R  Q+++      ++W+ +L+ PQ   G   P+ +    R    + L
Sbjct: 59  PVPNAVPIQDAAGREAQSSIFSTSGLSSWAKNLKIPQPSSGQESPTGKNTFSRLTSGLGL 118

Query: 372 RTLPKGP 352
           R  PKGP
Sbjct: 119 RLSPKGP 125


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,227,364
Number of Sequences: 37544
Number of extensions: 334573
Number of successful extensions: 1080
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)