Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_E16
(681 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L46721-1|AAC41774.1| 164|Homo sapiens mucin protein. 32 2.2
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 31 3.8
U78550-1|AAC51342.1| 328|Homo sapiens mucin MUC5B protein. 31 5.0
AF152478-1|AAD43739.1| 807|Homo sapiens protocadherin alpha 13 ... 31 5.0
AF152309-1|AAD43703.1| 950|Homo sapiens protocadherin alpha 13 ... 31 5.0
AC005609-1|AAC34314.1| 807|Homo sapiens KIAA0345-like 1 protein. 31 5.0
AB208924-1|BAD92161.1| 921|Homo sapiens protocadherin alpha 13 ... 31 5.0
Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein. 30 6.6
AK097855-1|BAC05184.1| 180|Homo sapiens protein ( Homo sapiens ... 30 6.6
AF007197-1|AAB84381.1| 335|Homo sapiens mucin protein. 30 8.8
AF007193-1|AAC02271.1| 441|Homo sapiens mucin protein. 30 8.8
>L46721-1|AAC41774.1| 164|Homo sapiens mucin protein.
Length = 164
Score = 31.9 bits (69), Expect = 2.2
Identities = 26/93 (27%), Positives = 33/93 (35%)
Frame = -3
Query: 643 TPSRFTTTLSLPLRGLRYPXTVTCLSIARXTXTPRALXMPTTTLALSIITGQSTTCQDAC 464
TPS TT S+ + + T S T P P T + + STT
Sbjct: 6 TPSPVPTTSSISV----LTTSTTSASTTSTTSGPGTTPSPVPTTSTTSAPTTSTTSAPTT 61
Query: 463 DVELIPSTPTRHGRTISTGWLPSTGCTHLATDS 365
P+T T T ST P+T T T S
Sbjct: 62 STTSAPTTSTPSAPTTSTTLAPTTSTTSAPTTS 94
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 31.1 bits (67), Expect = 3.8
Identities = 27/131 (20%), Positives = 35/131 (26%)
Frame = -3
Query: 649 TLTPSRFTTTLSLPLRGLRYPXTVTCLSIARXTXTPRALXMPTTTLALSIITGQSTTCQD 470
T P+ TT S+P + T T P T S STT
Sbjct: 649 TSAPTTSTTPASIPSTTSAPTTSTTSAPTTSTTSAPTTSTTSTPQTTTSSAPTSSTTSAP 708
Query: 469 ACDVELIPSTPTRHGRTISTGWLPSTGCTHLATDSXXXXXXXXXXXXXXXXXXXXXLRV* 290
P+T T T ST P+ T T +
Sbjct: 709 TTSTISAPTTSTISAPTTSTTSAPTASTTSAPTSTSSAPTTNTTSAPTTSTTSAPITSTI 768
Query: 289 KASNMSRTTSP 257
A S T++P
Sbjct: 769 SAPTTSTTSTP 779
Score = 31.1 bits (67), Expect = 3.8
Identities = 25/108 (23%), Positives = 34/108 (31%)
Frame = -3
Query: 553 TXTPRALXMPTTTLALSIITGQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGCTHLA 374
T P +P +T + + STT P+ T G T ST P+T T
Sbjct: 1082 TSAPTTSTIPASTPSTTSAPTTSTTSAPTTSTTSAPTHRTTSGPTTSTTLAPTTSTTSAP 1141
Query: 373 TDSXXXXXXXXXXXXXXXXXXXXXLRV*KASNMSRTTSPTGEQPRLTK 230
T S S +S TS T P+ +K
Sbjct: 1142 TTSTNSAPTTSTISASTTSTISAPT----TSTISSPTSSTTSTPQTSK 1185
Score = 30.7 bits (66), Expect = 5.0
Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 3/103 (2%)
Frame = -3
Query: 664 NSCRXTLTPSRFTT-TLSLPLRGLRYPXTVTCLSIARXTXTPRALXMPTTTLAL--SIIT 494
NS T T S TT T+S P T + S + + T A T+ S +
Sbjct: 1146 NSAPTTSTISASTTSTISAPTTSTISSPTSSTTSTPQTSKTSAATSSTTSGSGTTPSPVP 1205
Query: 493 GQSTTCQDACDVELIPSTPTRHGRTISTGWLPSTGCTHLATDS 365
STT P+T T G + +PST T AT S
Sbjct: 1206 TTSTTSASTTSTTSAPTTSTTSGPGTTPSPVPSTSITSAATTS 1248
Score = 30.3 bits (65), Expect = 6.6
Identities = 32/139 (23%), Positives = 45/139 (32%), Gaps = 1/139 (0%)
Frame = -3
Query: 643 TPSRFTTTLSLPLRG-LRYPXTVTCLSIARXTXTPRALXMPTTTLALSIITGQSTTCQDA 467
T + T+T S P+ + P T T T TP+ + + T + + STT
Sbjct: 752 TSAPTTSTTSAPITSTISAPTTST-------TSTPQTSTISSPTTSTTPTPQTSTTSSPT 804
Query: 466 CDVELIPSTPTRHGRTISTGWLPSTGCTHLATDSXXXXXXXXXXXXXXXXXXXXXLRV*K 287
P+T T T ST P T + T S
Sbjct: 805 TSTTSAPTTSTTSAPTTSTTSTPQTSISSAPTSSTTSAPTASTISAPTTSTTSFHT---- 860
Query: 286 ASNMSRTTSPTGEQPRLTK 230
S S TS T P+ +K
Sbjct: 861 TSTTSPPTSSTSSTPQTSK 879
>U78550-1|AAC51342.1| 328|Homo sapiens mucin MUC5B protein.
Length = 328
Score = 30.7 bits (66), Expect = 5.0
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Frame = -3
Query: 667 PNSCRXTL-TPSRFTTTLSLPLRGLRYPXTVTCLSIARXTXTPRALXMPTTTLAL-SIIT 494
P+S T TP + +T + P TVT SI T TP L TTT+A S+ T
Sbjct: 184 PSSSPGTARTPPVWISTTTTPTTS---GSTVTPSSIPGTTHTPTVLTTTTTTVATGSMAT 240
Query: 493 GQSTTCQDACDVELI--PSTPTRHGRTISTGWLPST 392
S+T LI +T T G T + P T
Sbjct: 241 PSSSTQTSGTPPSLITTATTITATGSTTNPSSTPGT 276
>AF152478-1|AAD43739.1| 807|Homo sapiens protocadherin alpha 13
short form protein protein.
Length = 807
Score = 30.7 bits (66), Expect = 5.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 482 HVPRRVRRGVDPFDAHKAWQDHLDRLAAIDRLYPSRYGLYLKD--RAYPITDLTAP 321
HV +VR VD + AW + +LAA+ P R GLY + P+ ++ AP
Sbjct: 589 HVVAKVR-AVDADSGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAP 643
>AF152309-1|AAD43703.1| 950|Homo sapiens protocadherin alpha 13
protein.
Length = 950
Score = 30.7 bits (66), Expect = 5.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 482 HVPRRVRRGVDPFDAHKAWQDHLDRLAAIDRLYPSRYGLYLKD--RAYPITDLTAP 321
HV +VR VD + AW + +LAA+ P R GLY + P+ ++ AP
Sbjct: 589 HVVAKVR-AVDADSGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAP 643
>AC005609-1|AAC34314.1| 807|Homo sapiens KIAA0345-like 1 protein.
Length = 807
Score = 30.7 bits (66), Expect = 5.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 482 HVPRRVRRGVDPFDAHKAWQDHLDRLAAIDRLYPSRYGLYLKD--RAYPITDLTAP 321
HV +VR VD + AW + +LAA+ P R GLY + P+ ++ AP
Sbjct: 589 HVVAKVR-AVDADSGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAP 643
>AB208924-1|BAD92161.1| 921|Homo sapiens protocadherin alpha 13
isoform 1 precursor variant protein.
Length = 921
Score = 30.7 bits (66), Expect = 5.0
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = -2
Query: 482 HVPRRVRRGVDPFDAHKAWQDHLDRLAAIDRLYPSRYGLYLKD--RAYPITDLTAP 321
HV +VR VD + AW + +LAA+ P R GLY + P+ ++ AP
Sbjct: 606 HVVAKVR-AVDADSGYNAWLSYELQLAAVGARIPFRVGLYTGEISTTRPLDEVDAP 660
>Z72496-1|CAA96577.1| 3570|Homo sapiens mucin MUC5B protein.
Length = 3570
Score = 30.3 bits (65), Expect = 6.6
Identities = 26/82 (31%), Positives = 35/82 (42%)
Frame = -3
Query: 655 RXTLTPSRFTTTLSLPLRGLRYPXTVTCLSIARXTXTPRALXMPTTTLALSIITGQSTTC 476
R P +TT + RG TVT SI T TP L TTT+A + S++
Sbjct: 744 RARTLPVWISTTTTPTTRG----STVTPSSIPGTTHTPTVLTTTTTTVATGSMATPSSST 799
Query: 475 QDACDVELIPSTPTRHGRTIST 410
Q + + +T T T ST
Sbjct: 800 QTSGTPPSLTTTATTITATGST 821
Score = 29.9 bits (64), Expect = 8.8
Identities = 29/106 (27%), Positives = 41/106 (38%), Gaps = 7/106 (6%)
Frame = -3
Query: 667 PNSCRXTLTPSRFTTTLSLPLRGLRYPXTVTCLSIARXTXTPRALXMPTTTLALSIITGQ 488
P + T TPS T+ T S+A + TP TT + + TG
Sbjct: 1904 PTATMSTATPSSTPETVHTSTVLTTTATTTRTGSVATPSSTPGTAH--TTKVPTTTTTGF 1961
Query: 487 STTCQDACDVELIP-------STPTRHGRTISTGWLPSTGCTHLAT 371
+ T + L P +TPT G T++ +P G TH AT
Sbjct: 1962 TATPSSSPGTALTPPVWISTTTTPTTRGSTVTPSSIP--GTTHTAT 2005
>AK097855-1|BAC05184.1| 180|Homo sapiens protein ( Homo sapiens
cDNA FLJ40536 fis, clone TESTI2047930. ).
Length = 180
Score = 30.3 bits (65), Expect = 6.6
Identities = 26/81 (32%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Frame = -1
Query: 582 PLPACPSRDXRXLPAPYXCPQLPSLSRLLQANLPRAKTRATWS*SLRRPQGMA----GPS 415
P +CP+ R P PY P SL P A+ A R P+GMA GP
Sbjct: 69 PPDSCPAFAQRLTPDPYRPPSAVSLPP-YNDGAPWARATAPHPAPSRLPEGMAPGPTGPG 127
Query: 414 RQAGCHRPAVPISLRTLPKGP 352
AG I + + PK P
Sbjct: 128 EVAGYTAFRSKIQVCSDPKSP 148
>AF007197-1|AAB84381.1| 335|Homo sapiens mucin protein.
Length = 335
Score = 29.9 bits (64), Expect = 8.8
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -3
Query: 667 PNSCRXTLTPSRFTTTLSLP-LRGLRYPXTVTCLSIARXTXTPRALXMPTTTLALSIITG 491
P S T+TPS T SLP + L TV+ +S + P + + T ++ +
Sbjct: 10 PTSQPTTITPSSVGITGSLPMMTDLTSVYTVSSMSARPTSVIPSSPTVQNTETSIFVSMM 69
Query: 490 QSTTCQDACDVELIPSTPTR 431
+TT +TPTR
Sbjct: 70 SATTPSGGSTFTSTENTPTR 89
>AF007193-1|AAC02271.1| 441|Homo sapiens mucin protein.
Length = 441
Score = 29.9 bits (64), Expect = 8.8
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -3
Query: 667 PNSCRXTLTPSRFTTTLSLP-LRGLRYPXTVTCLSIARXTXTPRALXMPTTTLALSIITG 491
P S T+TPS T SLP + L TV+ +S + P + + T ++ +
Sbjct: 44 PTSQPTTITPSSVGITGSLPMMTDLTSVYTVSSMSARPTSVIPSSPTVQNTETSIFVSMM 103
Query: 490 QSTTCQDACDVELIPSTPTR 431
+TT +TPTR
Sbjct: 104 SATTPSGGSTFTSTENTPTR 123
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,687,415
Number of Sequences: 237096
Number of extensions: 1713081
Number of successful extensions: 8602
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8571
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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