Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_E16
         (681 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.51 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.2  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = -3

Query: 280 NMSRTTSPTGEQPRLTK--RRVIVCWKHRIKRYLLESRSTKTL 158
           ++   T  T E+PR+ K  +R I   K ++KR+ +E+++ KTL
Sbjct: 420 SLRELTQVTEEKPRVMKMGKRNI---KAQVKRFRMETKAAKTL 459


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 314 DPLKPKSLKGIEYEPDN 264
           D  KP++ KGI  EP N
Sbjct: 550 DSTKPETSKGINAEPSN 566


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
 Frame = +2

Query: 383  GTAGRWQPACRDGPAMPCGRRRDQL-----HVARVLARG 484
            G AG WQ     GP +P     D+L     +  RV+A G
Sbjct: 948  GDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEG 986


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
 Frame = +2

Query: 383  GTAGRWQPACRDGPAMPCGRRRDQL-----HVARVLARG 484
            G AG WQ     GP +P     D+L     +  RV+A G
Sbjct: 944  GDAGIWQQQEFTGPPLPYAALIDELKPATRYTIRVIAEG 982


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 253  QWGLLSGSYSMPFRLLGLRGSM 318
            Q+G   G Y  P+   G RGS+
Sbjct: 1819 QYGSQYGQYGAPYDHYGSRGSV 1840


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,435
Number of Sequences: 438
Number of extensions: 3220
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)