Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_E05
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904     42   3e-04
04_04_0888 - 29098068-29098177,29098260-29098347,29099412-290994...    37   0.010
03_05_0156 + 21342982-21343186,21343326-21343375                       35   0.039
03_05_0059 - 20359480-20359552,20359690-20359777,20360255-203603...    35   0.039
05_02_0012 - 5575574-5575849,5575889-5575954,5576103-5576926,557...    29   1.5  
02_03_0415 + 18805541-18805610,18805962-18806128,18806616-188066...    28   4.5  
11_01_0292 - 2200714-2201478,2202691-2203395                           27   7.9  

>04_04_1407 - 33345230-33345372,33345492-33345626,33346559-33346904
          Length = 207

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 33/88 (37%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -2

Query: 344 IGFAYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDP-SNYXXXXXXXXX 168
           I  AYAA V AGG MGY K+GS  SL AG I   +L     QL   P             
Sbjct: 106 ITLAYAALVGAGGAMGYMKSGSQKSLAAGGISALVLYFVHTQLPVRPVFASSIGLGISAA 165

Query: 167 XXXXXGYRYYNSRKFMPAGLMFCLSVGM 84
                G R+  S K  PAG++  +S+ M
Sbjct: 166 LLSVMGSRFKKSGKIFPAGVVSLVSLVM 193


>04_04_0888 -
           29098068-29098177,29098260-29098347,29099412-29099450,
           29099722-29099786,29099863-29100082
          Length = 173

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 16/99 (16%)
 Frame = -2

Query: 335 AYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVG------------AYQLSQDPSNYX 192
           AY A +  GG   Y ++GS  S+  G+   +++G+             AY L Q P    
Sbjct: 61  AYGALLLGGGAFAYVRSGSKGSIFGGLSGSALMGISFIGLLGGQNRILAYYLMQSPETKA 120

Query: 191 XXXXXXXXXXXXXG----YRYYNSRKFMPAGLMFCLSVG 87
                              R YN+RK +P+GL+  LS+G
Sbjct: 121 LGDAVGFGSAFLFASVFGIRLYNTRKLVPSGLLLVLSLG 159


>03_05_0156 + 21342982-21343186,21343326-21343375
          Length = 84

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 18/32 (56%), Positives = 18/32 (56%)
 Frame = -2

Query: 332 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSIL 237
           Y A V  GGV GY K GS  SL AG  FG  L
Sbjct: 10  YGAAVLVGGVAGYLKRGSKASLAAGGGFGGAL 41


>03_05_0059 -
           20359480-20359552,20359690-20359777,20360255-20360326,
           20361765-20361963
          Length = 143

 Score = 34.7 bits (76), Expect = 0.039
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = -2

Query: 332 YAATVAAGGVMGYAKAGSIPSLGAGIIFGSIL 237
           Y   V AGGV+GYA+ GS  SL  G   G++L
Sbjct: 10  YGFAVLAGGVLGYARRGSTASLAGGAGAGALL 41


>05_02_0012 -
           5575574-5575849,5575889-5575954,5576103-5576926,
           5577333-5577405,5577936-5577983
          Length = 428

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/44 (38%), Positives = 25/44 (56%)
 Frame = -2

Query: 146 RYYNSRKFMPAGLMFCLSVGMFTKLLLKNVGASRMPRKSGETXL 15
           RYYN +K  P G     +V +FT++ LKN+  + +P KS    L
Sbjct: 42  RYYNYQKGQPYGAG-ANNVEIFTRVPLKNMMPASVPLKSSSLSL 84


>02_03_0415 +
           18805541-18805610,18805962-18806128,18806616-18806645,
           18807459-18807515,18808268-18808337,18808915-18810998
          Length = 825

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = -2

Query: 299 GYAKAGSIPSLGAGIIFGS 243
           G  + GSIPSLGAG+  GS
Sbjct: 223 GLTRHGSIPSLGAGLQMGS 241


>11_01_0292 - 2200714-2201478,2202691-2203395
          Length = 489

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = -2

Query: 335 AYAATVAAGGVMGYAKAGSIPSLGAGIIFGSILGVGAYQLSQDP 204
           A+A+  A GG  G  +AG    L AG  F S   VGA  L   P
Sbjct: 93  AFASAAALGGAGGMRRAGLAAILSAG-AFVSAFVVGAVALIAAP 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,540,342
Number of Sequences: 37544
Number of extensions: 182695
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)