Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_E05
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.2  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   9.1  

>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -2

Query: 125 FMPAGLMFCLSVGMFTKLLLKNVGASRMPRKS 30
           F+ +GL+  + + M+  +    VG+   PR S
Sbjct: 186 FIVSGLLMLVGMVMYISVFKAEVGSKLRPRSS 217


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 300 HYPTSGYGCCVCESY 344
           HYPT      VC SY
Sbjct: 797 HYPTREDNLLVCNSY 811


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 418 KFFRSQSLTISESLSTFRSIHL 483
           KF   Q LTI+E      S+HL
Sbjct: 27  KFREKQYLTIAERAEFSSSLHL 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,887
Number of Sequences: 438
Number of extensions: 2216
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)