Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_E02
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   3.7  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    26   6.5  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   8.6  
SPAC23D3.13c |||guanyl-nucleotide exchange factor|Schizosaccharo...    25   8.6  
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   8.6  

>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 517 FRHCSCHLHRHPTYSH*QTLVPFWERQHCSHLRLVSSQIRLLQNQRDLLPVD 672
           FRH    LH HP + H  +++P        H++LV  +++ L +   LL  D
Sbjct: 73  FRHGYWKLHPHPHHQH-DSIIPASWIHDTPHMKLVFHRLQNLPDGDLLLEND 123


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -2

Query: 173 KEKAKGRNGAVRLREPIQGRKDDEEVDR 90
           KEK+ G      LRE I   KDD+E  R
Sbjct: 146 KEKSSGETAGNILREQIATGKDDDEYAR 173


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -1

Query: 657 VPLVLQKTNL*RYQTKMRTMLSLPKWNQSLLMRVCG 550
           VPL+ QKT +     K+ ++  LPK N+  +  +CG
Sbjct: 391 VPLI-QKTKIAVVVRKIFSLAGLPKENEDEVKSICG 425


>SPAC23D3.13c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1616

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = +2

Query: 23  FMHSVTSFSLSVKVSWAYLMASSD 94
           F H VTS +L ++V ++++++S D
Sbjct: 274 FQHYVTSLTLDIEVIFSFIISSLD 297


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 352 NPVLVISGNRYKLMKRDGKKERWI 281
           NPV + +GN      R G KE W+
Sbjct: 74  NPVSLKTGNHTGTTTRGGSKENWV 97


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,019
Number of Sequences: 5004
Number of extensions: 49435
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)