Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_E02
         (741 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0520 - 16748646-16748741,16748821-16748895,16749260-167493...    29   3.9  
10_07_0162 - 13713504-13714754,13716445-13716522                       28   6.8  
06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323           28   6.8  
03_05_1157 + 30816143-30816359,30817005-30817120                       28   6.8  
02_01_0298 + 1998278-1998655,1998836-1999111,1999203-1999271,199...    28   9.0  
01_07_0187 + 41862342-41862622,41862730-41862912,41863236-418632...    28   9.0  

>04_03_0520 -
           16748646-16748741,16748821-16748895,16749260-16749362,
           16749635-16749783,16750986-16751110,16751320-16751389
          Length = 205

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -1

Query: 618 QTKMRTMLSLPKWNQSLLMRVCGMTMKMARTMT 520
           Q K+   + LP  + SL +   G TMK+ART T
Sbjct: 170 QQKVHVQIDLPSQSSSLSITKKGQTMKVARTNT 202


>10_07_0162 - 13713504-13714754,13716445-13716522
          Length = 442

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 361 KRGNPVLVISGNRY-KLMKRDGKKERWICIKTRER 260
           KR N +L  SGN Y  L KR+G  E W+ +  R+R
Sbjct: 111 KRWNRLL--SGNYYYSLRKRNGMAEEWVYVFKRDR 143


>06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323
          Length = 905

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 8   IKI*SFMHSVTSFSLSVKVSWAYLMASSDRLLHHPFFPVSALLILQHHF 154
           +K  +++  +TS  + + +SW YL ASSD L      P+  +L L H F
Sbjct: 184 VKSFNWVSRLTSL-VYLDLSWLYLAASSDWLQATNTLPLLKVLCLNHAF 231


>03_05_1157 + 30816143-30816359,30817005-30817120
          Length = 110

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 12/26 (46%), Positives = 19/26 (73%)
 Frame = +2

Query: 542 IVIPHTLINKLWFHFGSDSIVLIFVW 619
           ++IPH  +NK  FH  S +++LIF+W
Sbjct: 85  LIIPHDTLNKGKFHKRS-NLLLIFLW 109


>02_01_0298 +
           1998278-1998655,1998836-1999111,1999203-1999271,
           1999881-2000073,2000161-2000555
          Length = 436

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 9/32 (28%), Positives = 21/32 (65%)
 Frame = -2

Query: 173 KEKAKGRNGAVRLREPIQGRKDDEEVDRNSPS 78
           K++ +G+NG +  + PI   +++EE+++   S
Sbjct: 396 KQRVQGKNGTILTKRPISPSQEEEELNQRCRS 427


>01_07_0187 +
           41862342-41862622,41862730-41862912,41863236-41863299,
           41863547-41863756,41863850-41864035,41864180-41864478,
           41864584-41864731,41864798-41864863,41864945-41865217,
           41865523-41865741,41865864-41866013
          Length = 692

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 530 RAIFIVIPHTLINKLWFHFGSDSIVLIFVWY 622
           R   + +P TL+++LW HF     +  +V Y
Sbjct: 142 RLAILQLPFTLLSRLWVHFACLCFISFYVVY 172


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,031,602
Number of Sequences: 37544
Number of extensions: 306777
Number of successful extensions: 938
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)