Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_E02
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.99 
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   5.3  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   5.3  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   5.3  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   5.3  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   5.3  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.99
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +2

Query: 443 NINISSCRAIKTSHFHIRIVLSVISFVIVRAIFIVIPHTLI 565
           N  +S  R  +++  H   ++  +SF IV   +I+I  TL+
Sbjct: 388 NSEVSKSRTKESAWRHFAAIIEWLSFFIVIFTYIIILITLV 428


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 39  YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNPLSNNYNYNN 96


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 39  YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNN 96


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 39  YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNN 96


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 39  YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNN 96


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 39  YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNN 96


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 39  YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNN 96


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 39  YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNN 96


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 39  YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNN 96


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 39  YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNN 96


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 39  YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNN 96


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 272 YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNN 329


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 15/59 (25%), Positives = 27/59 (45%)
 Frame = -3

Query: 373 FSKSKRGNPVLVISGNRYKLMKRDGKKERWICIKTRERCNAFVVTENSNVTKISFNHNH 197
           +S+S+     L  +   Y+   R+  KER      RER     +  N+N    ++N+N+
Sbjct: 272 YSRSREREQKLYKNKREYRKY-RETSKERSRNRTERERSKEPKIISNNNSLSNNYNYNN 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,285
Number of Sequences: 438
Number of extensions: 3752
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)