Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D24
         (610 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353     37   0.014
05_03_0320 + 12353416-12353451,12353579-12353668,12353940-123540...    30   1.6  
01_06_1714 - 39368509-39369153,39369607-39369850,39369995-393701...    27   8.8  

>02_05_0715 - 31168831-31169071,31169947-31170064,31170305-31170353
          Length = 135

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = -1

Query: 493 HTEVQWKVMKNSITDMKHISTEKTLMXGKSAKE*MTSVVW-ISFPTQRLSKLP--FMHA 326
           H +++WK   ++    KH  TEK L  G S  E  TS  W +    Q + KL   +MHA
Sbjct: 71  HYQLRWKGKLSTSGSCKHSETEKLLYRGLSKSERYTSTFWMVCMDNQSIKKLDNNYMHA 129


>05_03_0320 +
           12353416-12353451,12353579-12353668,12353940-12354026,
           12354156-12354224,12355179-12355313,12355746-12355826,
           12355908-12355979,12356071-12356131,12356234-12356336,
           12356448-12356543,12356620-12356666,12356747-12356871,
           12356962-12357036
          Length = 358

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 83  TKNYFLILLTAXVNSFTCGKHFLKRVLAYRSQAP 184
           TK ++ +L+   V +F C   FL+ V  Y +Q P
Sbjct: 149 TKRFYTVLIWRRVLAFLCASQFLRIVTFYSTQLP 182


>01_06_1714 -
           39368509-39369153,39369607-39369850,39369995-39370191,
           39370607-39370708,39370826-39371026,39371138-39371381,
           39371813-39371983,39372450-39372751
          Length = 701

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 294 PDCKGIIIDSSACMKGSFDNLWVGNEIHTTEVIHSFADFPXINVFSVEICFISVIE 461
           P+ K  +  S  C+    + L + +    T V+HSFA +P IN  +  + +IS +E
Sbjct: 314 PNVKRGLYLSIECINTLNEGLVLHHASGMTYVLHSFARYPAINKPAAVLHWISHVE 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,027,545
Number of Sequences: 37544
Number of extensions: 290968
Number of successful extensions: 628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)