Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_D22
(710 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi... 29 0.66
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 28 1.1
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 27 2.6
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 27 2.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 4.6
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 26 6.1
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 26 6.1
SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc... 25 8.1
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa... 25 8.1
>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 306
Score = 29.1 bits (62), Expect = 0.66
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -3
Query: 291 FFYVCINGNTPRRSGCKLGQAFDDVSK 211
F + CING T ++S C L +AF SK
Sbjct: 275 FCWSCINGWTSKKSECPLCRAFSSPSK 301
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 28.3 bits (60), Expect = 1.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 300 DCQFFYVCINGNTPRRSGCKLGQAFDDVSKK 208
+C F +CI+G P+ K +AF D K+
Sbjct: 317 ECNFPSICIHGGLPQEERIKRYKAFKDFDKR 347
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 27.1 bits (57), Expect = 2.6
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = -1
Query: 308 TLTIVSSSTFVSTATPPGDL-DASSDRPLMTSVRSANGLGKFLNALSGTKGS*LTRSWMP 132
TLT + T +S + + RPL+ VRS +G+G F L G T +++
Sbjct: 1077 TLTAYNHQTLLSICQIHKETCQMTHKRPLLGHVRSMSGIGFFHTCLMGVFLG--TTTYLL 1134
Query: 131 SRTHLLRNPSLL 96
S NP LL
Sbjct: 1135 SPVDFANNPLLL 1146
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 27.1 bits (57), Expect = 2.6
Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = -1
Query: 488 ALMGNST**PVLMAWSTTTRPASALGLMKLKRRDVSLQRYSSSNVRLLMKPSV*PTLGMR 309
AL+G S + +AW T P SAL + + D R S+N M SV +G
Sbjct: 355 ALVGTSH---IRLAWGHNTLPVSALSQSQSQVSDEGFDRTLSANQIFGMNQSV---IGAN 408
Query: 308 TLTIVSSSTFVSTATPPGDLDASSDRPLMTS-VRSANGL 195
+ + SS + + +A P A++ L S V S NG+
Sbjct: 409 SGSSNSSGSSLKSA-PVSPRTAAAQSLLPNSVVSSINGM 446
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/50 (32%), Positives = 21/50 (42%)
Frame = -3
Query: 570 PQPSLHCIRQNGYFSHEDPKECGKFYFCVDGKFNMITCPDGLVYNDKTGI 421
P L + +N Y DPK +F F DG + T D L D+ I
Sbjct: 723 PTRGLKMLSENEYVDINDPKAIAEFLFRADG-IDKTTLGDYLGEGDEKSI 771
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.8 bits (54), Expect = 6.1
Identities = 19/58 (32%), Positives = 27/58 (46%)
Frame = -1
Query: 368 SSSNVRLLMKPSV*PTLGMRTLTIVSSSTFVSTATPPGDLDASSDRPLMTSVRSANGL 195
SSS+ S P+ +T +SSSTF+ST T +SS + S +A L
Sbjct: 220 SSSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSEVPSSTAALAL 277
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 6.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +1
Query: 49 CFAFAWALRLPARRTTSRLGFRSRWVLEG 135
CF FA LRLP +T L + +V+ G
Sbjct: 309 CFVFAQKLRLPQLQTGKILRWEYEFVIHG 337
>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 133 GIQLRVSQLPFVPLSAFRNFPSPFALLTDVIKGLSELASRSPGGVAVDTNVEE 291
G Q+R +L F F +F F +TD+ E R GG+ V T+ +E
Sbjct: 6 GPQIRSGELVFGVAHIFASFNDTFVHITDLTG--KETIVRVTGGMKVKTDRDE 56
>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
S14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 139
Score = 25.4 bits (53), Expect = 8.1
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 133 GIQLRVSQLPFVPLSAFRNFPSPFALLTDVIKGLSELASRSPGGVAVDTNVEE 291
G Q+R +L F F +F F +TD+ E R GG+ V T+ +E
Sbjct: 6 GPQIRSGELVFGVAHIFASFNDTFVHITDLTG--KETIVRVTGGMKVKTDRDE 56
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,983,305
Number of Sequences: 5004
Number of extensions: 61797
Number of successful extensions: 230
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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