Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D22
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.71 
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   5.0  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.6  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 522 EDPKECGKFYFCVDGK 475
           ED K   K YFC+DGK
Sbjct: 419 EDWKPLDKCYFCLDGK 434


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 528 RSSHFDEYSGGKVEVFEXWV 587
           +SS FD  +  +V+ +E WV
Sbjct: 98  KSSEFDSINSIRVKSYEIWV 117


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 326 PTLGMRTLTIVSSSTFVSTATPPGDLD 246
           PT G  T T+V ++  + +  P  +LD
Sbjct: 54  PTHGKGTPTVVKTNILIRSMGPVSELD 80


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 531 SSHFDEYSGGKVEV 572
           S HF EY G  +E+
Sbjct: 335 SEHFFEYGGNNIEI 348


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 28  LFIFYLNCFAFAWA 69
           LF+ +  C A +WA
Sbjct: 456 LFLMFFECIAISWA 469


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +1

Query: 28  LFIFYLNCFAFAWA 69
           LF+ +  C A +WA
Sbjct: 509 LFLMFFECIAISWA 522


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 174  EWYKGQLTDAELDALEN 124
            EWYKGQ      D+  N
Sbjct: 1344 EWYKGQGEQIRTDSTRN 1360


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -3

Query: 174  EWYKGQLTDAELDALEN 124
            EWYKGQ      D+  N
Sbjct: 1340 EWYKGQGEQIRTDSTRN 1356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,546
Number of Sequences: 438
Number of extensions: 4484
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)