Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D20
         (485 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    29   0.28 
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    26   2.6  
SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces po...    26   3.5  
SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.0  
SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr ...    25   8.0  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    25   8.0  

>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 86  YQYTFCFQKIKELCMXTP 33
           Y Y+FCFQK  ++C+ +P
Sbjct: 119 YGYSFCFQKFLKICLFSP 136


>SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1690

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 372  YEEIPQT*FRRNNLVGTIDYTLNI 443
            Y+ +P+T F RNNLVG    ++++
Sbjct: 1089 YDILPETKFTRNNLVGVCVLSVDV 1112


>SPAC227.09 |||folylpolyglutamate synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 417

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 360 WKCMATLIARFSNKPTSSEVLTAYLTQC 277
           WK +  +  RF  K T  E+LTA   QC
Sbjct: 84  WKQVIEVDRRFRTKATEFELLTATAFQC 111


>SPBC1711.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +1

Query: 25  FQSGVFMQSSFIFWKQKVYWYW 90
           FQSGV  Q   + W   + WY+
Sbjct: 157 FQSGVATQDLDVQWVSSISWYF 178


>SPBC146.04 |||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 192

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 360 WKCMATLIARFSNKPTSSE--VLTAYL 286
           WK + T+++ + N+PT  E  +L  YL
Sbjct: 74  WKLIHTVVSNYPNRPTLDERDILRHYL 100


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 147 GLAATQLIRHEELVHTSKGPVPIYFLL 67
           GL A+Q+   EE V ++    P+YFLL
Sbjct: 111 GLPASQVPAAEEEVESTPKAKPLYFLL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,865
Number of Sequences: 5004
Number of extensions: 48805
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)