Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D20
         (485 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0648 + 4689755-4690693                                           36   0.017
02_05_1130 - 34319558-34319603,34320236-34320335,34320498-343205...    34   0.070
09_04_0436 - 17558603-17559265,17559322-17559384                       27   6.0  

>06_01_0648 + 4689755-4690693
          Length = 312

 Score = 35.9 bits (79), Expect = 0.017
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = +2

Query: 68  SKKYIGTGPLLV*TSSSCLISWVAARPYSKQGIPSPALLSTP 193
           +K+Y+G  PLL   S S    ++ A P+ ++G+P+ AL + P
Sbjct: 44  AKRYLGANPLLAPVSPSSRFLFLDASPFPRRGLPAAALRALP 85


>02_05_1130 -
           34319558-34319603,34320236-34320335,34320498-34320577,
           34320680-34320840,34321602-34321731,34322055-34322230,
           34322873-34323068,34323768-34323889,34324376-34324468,
           34324672-34324740,34325259-34325423,34325771-34326061
          Length = 542

 Score = 33.9 bits (74), Expect = 0.070
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +2

Query: 53  PLSSGSKKYIGTGPLLV*TSSSCLISWVAARPYSKQGIPSPALLSTPTARAGWRRRPTGC 232
           PL+  + ++ G  P        CL+ W +A  Y+  G+P  A  S    +A +R+    C
Sbjct: 42  PLACAAPRHRGRPPPRR-RRGGCLVVWASADYYATLGVPRSA--SNKDIKAAYRKLARQC 98

Query: 233 RGAPF 247
            G+PF
Sbjct: 99  SGSPF 103


>09_04_0436 - 17558603-17559265,17559322-17559384
          Length = 241

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 152 SKQGIPSPALLSTPTARAGWRRRPTGCRGAPFTK 253
           S    P P   +TPT    WR  P  C+  P ++
Sbjct: 166 SSSATPPPNASATPTPSLSWRTTPPPCQRHPSSR 199


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,244,975
Number of Sequences: 37544
Number of extensions: 348999
Number of successful extensions: 915
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 914
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)