Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D17
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          165   1e-41
12_01_0323 - 2459854-2460306                                          165   2e-41
11_01_0317 - 2365493-2365786,2365825-2365953                          128   3e-30
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898...    29   3.0  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     28   5.2  
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    27   6.8  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  165 bits (402), Expect = 1e-41
 Identities = 78/114 (68%), Positives = 98/114 (85%)
 Frame = -2

Query: 457 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 278
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 277 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKD 116
            YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KD
Sbjct: 61  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKD 113


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  165 bits (401), Expect = 2e-41
 Identities = 78/114 (68%), Positives = 98/114 (85%)
 Frame = -2

Query: 457 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 278
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 277 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKD 116
            YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KD
Sbjct: 61  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKD 113


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score =  128 bits (308), Expect = 3e-30
 Identities = 67/114 (58%), Positives = 85/114 (74%)
 Frame = -2

Query: 457 MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 278
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV             VRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNV-------------VRG 47

Query: 277 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMNKD 116
            YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++KD
Sbjct: 48  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLDKD 100


>06_03_1161 -
           28089177-28089359,28089473-28089700,28089776-28089814,
           28090681-28090737,28090924-28091046
          Length = 209

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
 Frame = -2

Query: 454 KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI------RKDDEV 293
           +F  + ++S++    ++F     I+   +   L +  R+K    S+P+      R  D V
Sbjct: 42  EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101

Query: 292 QVVRGHYKGQQVGKVMQVYRKKFVVYIE 209
           QV+ G  KG +VG+V ++++    V ++
Sbjct: 102 QVIAGREKG-KVGEVTRLFKHNSTVIVK 128


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
 Frame = -2

Query: 358  LSKELRQKFNVKS-MPIRKDDEVQVVRGHYKGQQVGKVMQ--VYRKKFVVYIERIQREKA 188
            L+ E+ ++ N KS +P  K+D   V  GH + + V +VMQ  +     +  IE +Q E++
Sbjct: 3846 LNDEVEEEKNDKSNIPKEKEDRFTV--GHTE-ESVHEVMQSVLVSDADLRSIETLQCEES 3902

Query: 187  NGATAYVGIHPSKCVIVK 134
            NG  +      S C+IV+
Sbjct: 3903 NGVKSTGDYLESGCIIVE 3920


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 349  ELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERI 203
            E   KF   + P  K D +Q+V  + + QQ    + V  K+F +YI  +
Sbjct: 1278 ETTWKFLATTNPYEKVDRLQIVSEYMEIQQTDGHVDVSAKEFKMYISSL 1326


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,716,431
Number of Sequences: 37544
Number of extensions: 249726
Number of successful extensions: 610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)