Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D17
         (518 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    24   0.82 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   3.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   4.3  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   5.7  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.6  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.82
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 145 HTLKGECRHMLLHHWPFLFESS 210
           HT + +C H LL H P L + S
Sbjct: 330 HTPEPDCIHELLGHMPLLADPS 351


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 197 SLNPLNVYNKLF 232
           S+NP+NVY K +
Sbjct: 35  SINPINVYTKAY 46


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -1

Query: 182 CNSICRHSPFKVCDCQV 132
           C ++C    F  CDC++
Sbjct: 743 CFALCHCCDFDACDCEM 759


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +2

Query: 284 YNLNFIVFANRHGFYI 331
           YN +FI++++   FYI
Sbjct: 339 YNTDFIIYSSLSSFYI 354


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 4.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 184 HWPFLFESSQCIQQTF 231
           H+P++F  + CI Q+F
Sbjct: 117 HFPYVFGEAFCIIQSF 132


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 419 KQEEAFQCSFTYKASVDVLS 360
           K  + FQC   YK   D+L+
Sbjct: 115 KISKIFQCFMKYKTITDILN 134


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.0 bits (42), Expect = 7.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 470 RQNDTAKNRNRKSNS 514
           RQND  +N NR++++
Sbjct: 509 RQNDNKRNGNRQNDN 523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,342
Number of Sequences: 438
Number of extensions: 2383
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14477538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)