Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D15
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    33   0.016
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   1.0  
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce...    26   2.4  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    24   7.3  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    24   7.3  
SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.3  

>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 33.1 bits (72), Expect = 0.016
 Identities = 22/69 (31%), Positives = 28/69 (40%)
 Frame = -1

Query: 244 ALFLRKCTVAALNARRTTNVHTARSAVLIRATPXRVQSRLLTAEAPGAPANTQPAERAFT 65
           A++      +A N     N +TA +A    AT     +    A  P APANT  A     
Sbjct: 60  AVYNNNNNTSAANTNAAYNANTAANANANTATTTNAAATTSAAYNPNAPANTNAAYYPNA 119

Query: 64  AKTDKWNAD 38
           A T   NAD
Sbjct: 120 AATTTTNAD 128


>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +3

Query: 27  WHLSSAFHLSVFAVNARSAGCV 92
           WHLSS FHL +    A   G V
Sbjct: 496 WHLSSGFHLHITRFEAHDMGKV 517


>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 170

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 14/26 (53%), Positives = 16/26 (61%)
 Frame = +3

Query: 45  FHLSVFAVNARSAGCVFAGAPGASAV 122
           F LS   V++RS G  FAG   ASAV
Sbjct: 11  FRLSSLHVSSRSLGVYFAGIMFASAV 36


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 375 DGLHRAVEVLCSVNKKKQNGFNDIPVGC 292
           DG+ RA +V+ +       GF D+  GC
Sbjct: 202 DGIKRATDVMIAGKVAVVAGFGDVGKGC 229


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -1

Query: 298 WVCSRWLPLSSTPKPLARALFLRKCTVAALNARRTTNVHTARSAVLIRATPXRVQSRL 125
           W+CS    L+   K    A     CT AALN+ + T     RS   ++  P  ++ ++
Sbjct: 462 WLCSM---LAEKSKGYGGADLRALCTEAALNSIKRTYPQLYRSTKRLQIDPKTIKVKV 516


>SPBC15D4.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 212

 Score = 24.2 bits (50), Expect = 7.3
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
 Frame = +2

Query: 302 GMSLNPFCFFL---FTEHNTSTARCRP 373
           G  L  FC +L   FTEHN  T   RP
Sbjct: 112 GNDLQAFCEWLKVIFTEHNLFTKDARP 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,548,653
Number of Sequences: 5004
Number of extensions: 27518
Number of successful extensions: 61
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)