Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P13_pT_D15
(394 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0597 + 4438858-4439847,4439936-4440067,4440397-4441176,444... 30 0.76
05_06_0237 + 26618195-26618425,26618518-26618640,26619569-266197... 29 1.0
10_01_0149 + 1745355-1746230 28 3.1
02_03_0394 + 18546089-18546323,18546784-18546986,18547598-185477... 28 3.1
02_01_0660 - 4913033-4913368 28 3.1
06_03_1310 + 29238644-29240260 27 4.1
01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028 27 4.1
09_04_0239 + 15954995-15956242 27 5.4
04_04_0978 - 29856872-29858023 27 5.4
03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156 27 7.1
03_05_1071 + 30133696-30133874,30134294-30135200,30135224-301353... 27 7.1
06_03_0024 - 15563574-15563632,15563887-15563914,15564017-155642... 26 9.4
06_01_0704 + 5120185-5120535 26 9.4
04_04_1414 - 33394518-33394847 26 9.4
02_05_1148 - 34458732-34460627,34462299-34462547 26 9.4
>07_01_0597 +
4438858-4439847,4439936-4440067,4440397-4441176,
4441359-4441646,4441710-4441808
Length = 762
Score = 29.9 bits (64), Expect = 0.76
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -1
Query: 226 CTVAALNARRTTNVHTARSAVLIRATPXRVQSRLLTAEAPGAPANTQPAERAFTAKT 56
CTVAA+ R + A + + + RLL A AP A A Q + + KT
Sbjct: 71 CTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKT 127
>05_06_0237 +
26618195-26618425,26618518-26618640,26619569-26619736,
26619824-26621497
Length = 731
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = -3
Query: 335 TKKNKMGSMTFLLGVFALVTFVFYAEAAGTCPLP 234
T+++ G M FL+ V ALVTFV + + A +C +P
Sbjct: 362 TRRSLFGYMGFLVAV-ALVTFVGFVKGAISCYIP 394
>10_01_0149 + 1745355-1746230
Length = 291
Score = 27.9 bits (59), Expect = 3.1
Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
Frame = -1
Query: 271 SSTPKPLARALFLRKCTVAALNARRTTNVHTARSAVLIRATPXRVQSRLLTAEAPGAPAN 92
SS P+ + ++LF + A++ R+ T V+ R LIR+ + + PG +
Sbjct: 11 SSQPRMMEQSLFYTQPPARAVHTRKVTAVNLHREMSLIRSLMPTFPFVAVDTQFPGV-VH 69
Query: 91 TQPAERAFTAKTDKW-----NADDRC 29
P TA D++ NAD+ C
Sbjct: 70 PHPRGAGVTA-DDRYAAVRANADELC 94
>02_03_0394 +
18546089-18546323,18546784-18546986,18547598-18547787,
18548624-18549015,18549495-18550055
Length = 526
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 128 AAYGGGTGSSS-KHATGGTGVYCENGQVER*RQMPAGAXDEEK 3
AAYGGG GSS+ +H G G Y + + +Q+P A EK
Sbjct: 34 AAYGGGGGSSAGRHGERGGG-YPDLHHHHQQQQLPMAAPRVEK 75
>02_01_0660 - 4913033-4913368
Length = 111
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 260 EAAGTCPLPSKVYGCSPKCKEDYECTH 180
+AA P PSK +GC+P +D C H
Sbjct: 40 DAAAAAPAPSKGHGCNP--LKDKTCRH 64
>06_03_1310 + 29238644-29240260
Length = 538
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = -1
Query: 109 PGAPANTQPAERAFTAKTDKWNADDRCQREPRTKRR 2
PGAPA PA+ A A + +CQ P T RR
Sbjct: 336 PGAPAQRPPAQCAAAAAHPFDCSKAQCQATPPTTRR 371
>01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028
Length = 482
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -1
Query: 154 ATPXRVQSRLLTAEAPGAPANTQPAERAFTA 62
+TP RV S ++ PGAPA A RA +A
Sbjct: 15 STPLRVASPVVRFRRPGAPAPVVSAARASSA 45
>09_04_0239 + 15954995-15956242
Length = 415
Score = 27.1 bits (57), Expect = 5.4
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 271 SSTPKPLA-RALFLRKCTVAALNARRTTNVHTAR 173
+ST P+A R R+CT+ A +TT++H R
Sbjct: 354 TSTSSPMAKRRRRRRRCTLHGAGAEKTTSMHALR 387
>04_04_0978 - 29856872-29858023
Length = 383
Score = 27.1 bits (57), Expect = 5.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 128 AAYGGGTGSSSKHATG 81
AAYGGG GS +H G
Sbjct: 101 AAYGGGAGSGGRHGHG 116
>03_06_0218 - 32442904-32443347,32444426-32444626,32446584-32447156
Length = 405
Score = 26.6 bits (56), Expect = 7.1
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -3
Query: 131 PAAYGGGTGSSSKHATGGTGVYCENGQVER*RQMPAGA 18
PA GGG G + + GG G Y + G + P GA
Sbjct: 130 PATGGGGGGGAFGGSGGGGGGYGDAGGAVEEKACPCGA 167
>03_05_1071 +
30133696-30133874,30134294-30135200,30135224-30135358,
30135545-30136553,30136699-30136703
Length = 744
Score = 26.6 bits (56), Expect = 7.1
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 119 GGGTGSSSKHATGGTGV 69
GG TGS+S ATGG+ V
Sbjct: 318 GGATGSASVQATGGSAV 334
>06_03_0024 -
15563574-15563632,15563887-15563914,15564017-15564202,
15564283-15564332,15564435-15564691,15564772-15564910,
15565627-15565716,15567354-15567663
Length = 372
Score = 26.2 bits (55), Expect = 9.4
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 299 TGMSLNPFCFFLFT-EHNTSTARCRPS 376
+G+SLN F + LFT E +T T RPS
Sbjct: 131 SGVSLNAFLYGLFTKECSTETMDIRPS 157
>06_01_0704 + 5120185-5120535
Length = 116
Score = 26.2 bits (55), Expect = 9.4
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 78 SAGCVFAGAPGASAVSSRL*TRLGVA-RIRTADLAVCTFVVLLA 206
S GC AG P A + LG++ R AD+A+C F++ A
Sbjct: 12 SLGCAVAGGPEALRI------LLGLSGRSPVADIAICVFLICAA 49
>04_04_1414 - 33394518-33394847
Length = 109
Score = 26.2 bits (55), Expect = 9.4
Identities = 22/72 (30%), Positives = 30/72 (41%)
Frame = +3
Query: 63 AVNARSAGCVFAGAPGASAVSSRL*TRLGVARIRTADLAVCTFVVLLAFRAATVHFRRKR 242
AV+A G FAG G +V + +G+A + A +A+ FVV RKR
Sbjct: 5 AVDA-GLGRGFAGGGGGGSVPDMSRSVVGIALVFVATVAIVAFVVFNCADGMDSSGGRKR 63
Query: 243 ARASGFGVEDKG 278
G G G
Sbjct: 64 LTNPGGGTVGVG 75
>02_05_1148 - 34458732-34460627,34462299-34462547
Length = 714
Score = 26.2 bits (55), Expect = 9.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -2
Query: 387 IRPADGLHRAVEVLCSVNKKKQNGFNDIPV 298
+ P G+H+A CS+ NG +PV
Sbjct: 385 VSPTAGVHKAAPEYCSLLPYTSNGCQQVPV 414
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,143,553
Number of Sequences: 37544
Number of extensions: 221867
Number of successful extensions: 825
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 672845152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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