Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D14
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    25   0.84 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.6  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   5.9  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    22   5.9  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   7.8  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   7.8  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   7.8  

>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 25.0 bits (52), Expect = 0.84
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 181 NFVNYSKFKNIMNLYDKKCIY 243
           N+ NY+ + N  N Y+KK  Y
Sbjct: 90  NYSNYNNYNNNYNNYNKKLYY 110


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 318 KYEKWTLI*N*INYFRYFDVFTKTCLYSLKKSL 416
           +Y+K T     IN     +V+TK  +Y++K ++
Sbjct: 22  RYDKMTRPPGEINSINPINVYTKAYIYTIKSNM 54


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 733 VVYGDVSLVFNDKINIRTVSYVLNVF 656
           +VY  V+++  D IN  +++YV ++F
Sbjct: 31  IVYFHVTVLSIDSINEESMTYVADIF 56


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 178 INFVNYSKFKNIMNLYD 228
           IN +NYS F N+   YD
Sbjct: 129 INRLNYSAFVNLTAYYD 145


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 686 SYRVLCFKCL*IEFSKKKLC 627
           SY  +  KC  +EFS+ K C
Sbjct: 76  SYHRINLKCSLVEFSENKNC 95


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 238 IYKKKTDEFKKDT 276
           IY K+ DE KKD+
Sbjct: 41  IYSKECDEMKKDS 53


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 238 IYKKKTDEFKKDT 276
           IY K+ DE KKD+
Sbjct: 41  IYSKECDEMKKDS 53


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +1

Query: 238 IYKKKTDEFKKDT 276
           IY K+ DE KKD+
Sbjct: 41  IYSKECDEMKKDS 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,582
Number of Sequences: 438
Number of extensions: 4479
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)