Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D13
         (577 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    35   0.010
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    29   0.49 
SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr...    29   0.64 
SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces pombe...    29   0.64 
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    25   7.9  

>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 34.7 bits (76), Expect = 0.010
 Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 5/149 (3%)
 Frame = -3

Query: 521 MAVCVAVIGKDNSPLY---IGGIGN--DTSSDNELSRQWLVHTALDALEERLTTANPNNS 357
           M    A+IG  ++P+Y   +G I    D S ++ L+ Q++VH++LD +++   T+N    
Sbjct: 1   MTAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLN-QFIVHSSLDIVDQLQWTSNA--- 56

Query: 356 GTNTTTARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSSTSPSGSNIRDAEVRTA 177
                         Y+  +       I  YVT + ++ +L+  + S          ++  
Sbjct: 57  -------------FYMKTIDQFHEMYISAYVTPSNMRFMLLHQNQSADN-------IKLF 96

Query: 176 LRRLHALYADAICNPFHLPGDQITXPKFD 90
            + LH LY   + +PF+ P   I    FD
Sbjct: 97  FQELHELYIKTLMSPFYQPNQPIRSQAFD 125


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 482 PLYIGGIGNDTSSDNELSRQWLVHTALDALEERLTTANPNNSGT 351
           P Y   + ++ S D    R W+    L+  EE+   A P  S T
Sbjct: 526 PAYFVNLADEPSQDRSEGRYWVTGRTLEQAEEKAKAAFPGKSFT 569


>SPBC17G9.03c |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 591

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -3

Query: 437 ELSRQWLVHTALDALEERLTTANPNNSGTNTTTARTDLRDL 315
           + SR W     ++ LEE+L T  P     +T  A   LRDL
Sbjct: 390 DFSRPWRRINMIEYLEEKLNTKFPPGDQLHTPEANAFLRDL 430


>SPAC15A10.12c |||sedlin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 117

 Score = 28.7 bits (61), Expect = 0.64
 Identities = 25/98 (25%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
 Frame = -3

Query: 515 VCVAVIGKDNSPLYIGGIGNDTSSDNELSR-QWLVHTALDALEERLTTANPNNSGTNTTT 339
           V +++ G  +  LY+  I  D    + L+R Q+L   +LD + + +      N G  T+ 
Sbjct: 7   VFLSIAGPKDEQLYLEII--DPKEKHLLARYQYLGELSLDVINDLV------NDGERTSN 58

Query: 338 ARTDLRDLYLGLLFSTDTHKIYGYVTNTRIKLVLVTSS 225
                 D +LGLL   +    Y + +NT++K +L   +
Sbjct: 59  ------DCFLGLLGVEEDISTYAFYSNTKVKFILAVKA 90


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -3

Query: 404 LDALEERLTTANPNNSGTNT 345
           L+ L +RL+T NPNN+  +T
Sbjct: 67  LNQLCKRLSTGNPNNTNAST 86


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,509
Number of Sequences: 5004
Number of extensions: 45302
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)