Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D13
         (577 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89245-1|AAB49459.1|  612|Caenorhabditis elegans transcription f...    28   5.5  
U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (gr...    28   5.5  
AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical ...    28   5.5  
AF003141-10|AAK21487.1|  612|Caenorhabditis elegans Uncoordinate...    28   5.5  
AF001272-1|AAB84235.1|  612|Caenorhabditis elegans enhancer of s...    28   5.5  
AF001271-1|AAB84234.1|  612|Caenorhabditis elegans enhancer of s...    28   5.5  
Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    27   9.5  
AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U89245-1|AAB49459.1|  612|Caenorhabditis elegans transcription
           factor UNC-37 protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 515 VCVAVIGKDNSPLYIGGIG 459
           VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343


>U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (grd
           related) protein12 protein.
          Length = 186

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/53 (33%), Positives = 20/53 (37%)
 Frame = -1

Query: 472 LVASATTPAATMSCPGSGSCTRRWTPWRRGSPLRILTIQERTQPLPELICGTC 314
           L+ SA   A   S  G  +C    TP     P   L I   T P P   C TC
Sbjct: 10  LLFSAPASAFFNSLFGGSNCGCSCTPPPSTCPTTCLPIMTCTPPSPPACCNTC 62


>AF025469-6|AAR12979.1|  813|Caenorhabditis elegans Hypothetical
           protein W09B6.1b protein.
          Length = 813

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 443 DNELSRQWLVHTALDALEERLTTANPNNS 357
           D+EL  + LV T L A+  R+T  NP++S
Sbjct: 424 DSELPDEVLVDTKLHAIAARITCENPDDS 452


>AF025469-5|AAG00029.1| 2054|Caenorhabditis elegans Hypothetical
           protein W09B6.1a protein.
          Length = 2054

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -3

Query: 443 DNELSRQWLVHTALDALEERLTTANPNNS 357
           D+EL  + LV T L A+  R+T  NP++S
Sbjct: 424 DSELPDEVLVDTKLHAIAARITCENPDDS 452


>AF003141-10|AAK21487.1|  612|Caenorhabditis elegans Uncoordinated
           protein 37 protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 515 VCVAVIGKDNSPLYIGGIG 459
           VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343


>AF001272-1|AAB84235.1|  612|Caenorhabditis elegans enhancer of
           split groucho protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 515 VCVAVIGKDNSPLYIGGIG 459
           VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343


>AF001271-1|AAB84234.1|  612|Caenorhabditis elegans enhancer of
           split groucho protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 515 VCVAVIGKDNSPLYIGGIG 459
           VC A I +DNS +Y GG G
Sbjct: 325 VCAATISRDNSRVYTGGKG 343


>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 375 SGEPLLQGVQRRVHEPLPGQLIVAAGVVADATNVQRRIIFSD 500
           + EPL      R+H P+P Q      ++A AT+V   +I  D
Sbjct: 103 TAEPLPSPAATRIHHPIPVQ--YNTDLIAAATSVNSNVILVD 142


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 375 SGEPLLQGVQRRVHEPLPGQLIVAAGVVADATNVQRRIIFSD 500
           + EPL      R+H P+P Q      ++A AT+V   +I  D
Sbjct: 103 TAEPLPSPAATRIHHPIPVQ--YNTDLIAAATSVNSNVILVD 142


>AC084161-1|ABD63205.1| 1375|Caenorhabditis elegans Hypothetical
           protein Y92H12A.5 protein.
          Length = 1375

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 160 LCTLTPYAIHSIYPVIKLLHRNSTSK 83
           L T+T   IHSI  +I+LL RN T K
Sbjct: 597 LLTITTLPIHSILNMIELLLRNPTWK 622


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,189,553
Number of Sequences: 27780
Number of extensions: 277490
Number of successful extensions: 830
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)