Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D12
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomy...    50   1e-07
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    28   0.73 
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   5.2  
SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    25   5.2  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    25   6.8  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    24   9.0  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    24   9.0  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           24   9.0  
SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    24   9.0  

>SPAC16A10.02 |||transcription coactivator Sub1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 136

 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
 Frame = -1

Query: 257 AEKKAKMADRTNDKEPTWVLQG--KKLLKVREFKGKVYVDIREFYEKNGELLPGTK 96
           A  K    ++ +D E  W L    KK + + EF+G  YV IRE+YEK+G++LPG K
Sbjct: 13  ASSKKPKTEKQSDHELHWALNETEKKRITLSEFRGTRYVHIREYYEKDGDMLPGKK 68



 Score = 24.6 bits (51), Expect = 6.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 100 QKGISLTPEQWRKLLSVGEEVNETV 26
           +KGI+L   +W+KL  +  EV++++
Sbjct: 67  KKGIALNINEWKKLKQLIHEVDDSL 91


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 27.9 bits (59), Expect = 0.73
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
 Frame = -1

Query: 278 PEDRNPPAEKKAKMADRTNDKEPTWVLQGKKLLK-VREFKGKVYVDIREFYEKNGELLPG 102
           PE    P+ K A+  D     +    + G +L K V E   K+Y   R+   K G ++  
Sbjct: 149 PEPLFTPSTKAAEGHDENIHPDEVSKIVGPELAKQVAETSVKLYKIARDVALKKGIIIAD 208

Query: 101 TKRDKSHSRTMEKIVI 54
           TK +     T  KIV+
Sbjct: 209 TKFEFGVDETTNKIVL 224


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 105 W*KFTILFIKFSYVYIYFSFEFS 173
           W K   +F+KFS + + FS  FS
Sbjct: 51  WFKHQSVFLKFSLIVLLFSLMFS 73


>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 25.0 bits (52), Expect = 5.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 3   KNIKHMELTVSLTSSPTD 56
           +N+KH+ +T+S  + PTD
Sbjct: 315 ENLKHLRITLSYFNKPTD 332


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = -2

Query: 307 IVLVVTVMTALKIGTLLLKKRQKWQTGL 224
           ++++V+ +T ++   L+LKK   W+  L
Sbjct: 733 VIILVSKITGVQSPPLILKKHDNWKVSL 760


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 94  GISLTPEQWRKLLSVGEEVNETVSSMC 14
           GIS  PE  R L+++G++  E +  MC
Sbjct: 195 GISFLPESPRYLIAIGKD-EEALDIMC 220


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 116 ELLPGTKRDKSHSRTMEKI 60
           +LLPG   D+ +S T+EKI
Sbjct: 633 QLLPGNLHDQFYSPTIEKI 651


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 254 EKKAKMADRTNDKEPTWVLQGKKLLKVREFKGKVYVDIREFYEKNGELL 108
           EKK  + D T  K   + L+  +L++    +GK +     F EK  +L+
Sbjct: 46  EKKENLEDLTLLKTSAFELKLNELIREISVRGKYFRHANTFVEKIKDLI 94


>SPCC569.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 121

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 57  NNFLHCSGVRLIPFCTW*KFT 119
           NNF  C      PFCT  +FT
Sbjct: 100 NNFFICQDANSGPFCTAWRFT 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,566,677
Number of Sequences: 5004
Number of extensions: 27587
Number of successful extensions: 83
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)