Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P13_pT_D12
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0205 + 20897376-20897597,20898623-20898774,20899874-209000...    44   7e-05
01_06_0427 - 29273872-29273966,29275507-29275609,29275702-29276058     36   0.019
01_01_0962 + 7570490-7570796,7571984-7572540,7572702-7572749,757...    28   2.9  
07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874     27   5.1  

>02_04_0205 +
           20897376-20897597,20898623-20898774,20899874-20900084,
           20900734-20900872,20901310-20901341,20901471-20901557,
           20901720-20901932,20903687-20903869,20903979-20904084,
           20905042-20905064,20905511-20905570
          Length = 475

 Score = 43.6 bits (98), Expect = 7e-05
 Identities = 19/27 (70%), Positives = 22/27 (81%)
 Frame = -1

Query: 176 VREFKGKVYVDIREFYEKNGELLPGTK 96
           VR + GKV VDIREFYEK+G+ LPG K
Sbjct: 422 VRTWNGKVVVDIREFYEKDGKTLPGRK 448


>01_06_0427 - 29273872-29273966,29275507-29275609,29275702-29276058
          Length = 184

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -1

Query: 275 EDRNPPAEKKAKMADRTNDKEPTWVL---QGKKLLKVREFKGKVYVDIREFYEKNGELLP 105
           E+     E++     R  D E   +L     ++ + ++EFKGK  + IRE+Y K+G+ LP
Sbjct: 92  EEEEEEEEERGGGTKREYDDEGDLILCRLSARRRVTLQEFKGKTLLSIREYYFKDGKELP 151


>01_01_0962 +
           7570490-7570796,7571984-7572540,7572702-7572749,
           7572841-7573789,7574573-7575528
          Length = 938

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -2

Query: 340 REKKNLRTRKTIVLVVTVMTALKIGTLLLKKRQKWQTGLMIKSQHGCYR 194
           R KK LRT K +    T    L+I  +L+ + +  +T +  ++  GC+R
Sbjct: 479 RMKKCLRTLKVVGNGDTNEVCLQISNVLIIETEDLKTNVHFENSEGCFR 527


>07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874
          Length = 488

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = -1

Query: 227 TNDKEPTWVLQGKKLLKVREFKGKVYVDIREFYEKNGELLPGTKRDKSHSR 75
           T+ + PTW L   KL +V EF+G +   + +        L G +  + H R
Sbjct: 117 TDHRGPTWRLSITKLARVNEFRGDLVATLDDLLRSG--TLDGLEELRFHYR 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,278,546
Number of Sequences: 37544
Number of extensions: 145987
Number of successful extensions: 358
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 358
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)